Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_A12
(271 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43571|YFC5_YEAST Hypothetical 117.8 kDa protein in STE2... 29 3.9
sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD2... 28 8.7
sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein C... 28 8.7
>sp|P43571|YFC5_YEAST Hypothetical 117.8 kDa protein in STE2-FRS2 intergenic region
Length = 1029
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +2
Query: 53 CLKSFLLKLINSQRSVFLLSM*IINQL*LYNTTRAIIYAYRS*MNLSLLVVYL 211
C++ LLKL N+++ + LL+ YN T ++ + S +N+ +++V+L
Sbjct: 897 CIRVALLKLSNNEQKLNLLN---------YNMTLLLLLLFVSAINIPIIIVFL 940
>sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD28 precursor
Length = 218
Score = 27.7 bits (60), Expect = 8.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 25 YSYKLSTIELSKIVFVKVNKFTAICISTFNVNYQP 129
YSY L E ++ VN +C+ N YQP
Sbjct: 43 YSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQP 77
>sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28 precursor
Length = 218
Score = 27.7 bits (60), Expect = 8.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 25 YSYKLSTIELSKIVFVKVNKFTAICISTFNVNYQP 129
YSY L E ++ VN +C+ N YQP
Sbjct: 43 YSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQP 77
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,185,395
Number of Sequences: 369166
Number of extensions: 391577
Number of successful extensions: 932
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)