Planaria EST Database


DrC_01487

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01487
         (720 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89AP7|ILVI_BUCBP  Acetolactate synthase large subunit (A...    33   1.0  
sp|P30550|GRPR_HUMAN  Gastrin-releasing peptide receptor (GR...    32   1.3  
sp|P52500|GRPR_RAT  Gastrin-releasing peptide receptor (GRP-...    32   1.7  
sp|Q58842|YE47_METJA  Hypothetical protein MJ1447                  32   2.2  
sp|Q923X9|TAA8A_RAT  Trace amine-associated receptor 8a (Tra...    32   2.2  
sp|P21729|GRPR_MOUSE  Gastrin-releasing peptide receptor (GR...    31   2.9  
sp|P12223|YCF1B_MARPO  Hypothetical 57 kDa protein ycf1 (ORF...    31   3.8  
sp|O60313|OPA1_HUMAN  Dynamin-like 120 kDa protein, mitochon...    30   6.5  
sp|P58960|GR39B_DROME  Putative gustatory receptor 39b             30   6.5  
sp|P58281|OPA1_MOUSE  Dynamin-like 120 kDa protein, mitochon...    30   6.5  
>sp|Q89AP7|ILVI_BUCBP Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid
           synthase large subunit) (ALS)
          Length = 576

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 15/35 (42%), Positives = 25/35 (71%)
 Frame = +2

Query: 89  KSSSTLLNDKKRRKRRPQNVMKILTGLTIIHVFTT 193
           KS ++L  D+K +K +PQNV++I++ LT  + F T
Sbjct: 358 KSKNSLEYDRKSKKIKPQNVIEIISALTNGNAFVT 392
>sp|P30550|GRPR_HUMAN Gastrin-releasing peptide receptor (GRP-R) (GRP-preferring bombesin
           receptor)
          Length = 384

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +2

Query: 257 DPTLKRILTSSLV-LILFTNNALNFFVYYISSTVFRR--NVVLLLIGEINKANIRQCHST 427
           D ++   +TS    L+ FTN+ +N F  Y+ S  FR+  N  LL         I + HST
Sbjct: 295 DTSMLHFVTSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLC---CQPGLIIRSHST 351

Query: 428 GGNTTKMVNL 457
           G +TT M +L
Sbjct: 352 GRSTTCMTSL 361
>sp|P52500|GRPR_RAT Gastrin-releasing peptide receptor (GRP-R) (GRP-preferring bombesin
           receptor)
          Length = 384

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +2

Query: 257 DPTLKRILTSSLV-LILFTNNALNFFVYYISSTVFRR--NVVLLLIGEINKANIRQCHST 427
           D ++   +TS    L+ FTN+ +N F  Y+ S  FR+  N  LL       + + + HST
Sbjct: 296 DTSMLHFITSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLC---CQPSLLNRSHST 352

Query: 428 GGNTTKMVN 454
           G +TT M +
Sbjct: 353 GRSTTCMTS 361
>sp|Q58842|YE47_METJA Hypothetical protein MJ1447
          Length = 381

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 518 VIKFSECLLW---KKIINIEFCRYFSKGKCLENTFPNF*TFKHCILLNEKKN 664
           +IKF E +L    K I+N+       KG+ +ENTF N  T  +C+  N + N
Sbjct: 1   MIKFGEAVLGNEIKAIVNVAL----GKGELIENTFTNALTRGNCVFANLRPN 48
>sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Trace amine receptor 11)
           (TaR-11)
          Length = 344

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
 Frame = +2

Query: 77  LSKHKSSSTLLNDKKRRKRRPQNVMKILTGLTIIHVFTT*PGAGFTMLKSFFPFTLRKDD 256
           +S  K  S+L + K R  +R +   K L G+T++             + S+ P+T+    
Sbjct: 234 ISGSKGESSLESHKARVAKRERKAAKTL-GVTVV-----------AFMVSWLPYTIDTLI 281

Query: 257 DPTLKRILTSSLVLIL----FTNNALNFFVYYISSTVFRRNVVLLLIGEINKAN 406
           D  +  I  + +  I     + N+A+N  +Y      FR+ + L+L GEI K++
Sbjct: 282 DAFMGFITPAYVYEICCWSAYYNSAMNPLIYAFFYPWFRKAIKLILSGEILKSH 335
>sp|P21729|GRPR_MOUSE Gastrin-releasing peptide receptor (GRP-R) (GRP-preferring bombesin
           receptor)
          Length = 384

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +2

Query: 257 DPTLKRILTSSLV-LILFTNNALNFFVYYISSTVFRRNVVLLLI----GEINKANIRQCH 421
           D ++   +TS    L+ FTN+ +N F  Y+ S  FR+     L+    G +N++     H
Sbjct: 296 DTSMLHFVTSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLCCQPGLMNRS-----H 350

Query: 422 STGGNTTKMVN 454
           STG +TT M +
Sbjct: 351 STGRSTTCMTS 361
>sp|P12223|YCF1B_MARPO Hypothetical 57 kDa protein ycf1 (ORF 464)
          Length = 464

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = -1

Query: 333 TKKFNALFVKSISTKLEVKIRFNVGSSSFLSVNGKKLFNIVNPAPGQVVNTWIIVNPVRI 154
           TKK N +F +++ T        N+   +FL++N KK++N  N    ++  ++ I N    
Sbjct: 126 TKKRNKIFKQNLLTYSCFDFTKNLAIRNFLNLNRKKIYN--NIIINKIQKSYFIYNKKAK 183

Query: 153 FITFCGRRFLRFLSFN 106
           ++ F  ++   F  +N
Sbjct: 184 YLDFFSQKQNIFFEYN 199
>sp|O60313|OPA1_HUMAN Dynamin-like 120 kDa protein, mitochondrial precursor (Optic
           atrophy 1 gene protein)
          Length = 960

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +1

Query: 25  NVAHKMSNCFYVLTKEYVVKT*EQFDIIE*QKTKKTSPTKCNENSYWINNYPCVYNLTRC 204
           N++  +S+CF+ + +E V +  + F             T+ N  + W NNYP +  L R 
Sbjct: 543 NLSLAVSDCFWKMVRESVEQQADSF-----------KATRFNLETEWKNNYPRLRELDRN 591

Query: 205 RIYDVEK 225
            +++  K
Sbjct: 592 ELFEKAK 598
>sp|P58960|GR39B_DROME Putative gustatory receptor 39b
          Length = 369

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
 Frame = +2

Query: 296 LILFTNNALNFFVYYISSTVFRRNVVLL-----LIGEINKANIRQCHSTGGNTTKMVNLN 460
           L+ F ++ L+  +  +   +   NV LL     L+G I   N+ +CH  G N T   N N
Sbjct: 146 LLYFWSSLLSILIIRMQFVLVLLNVELLGHHVSLLG-IRLQNVLECHLMGANCTLDGNAN 204

Query: 461 KQIDEEI*I---NSYLYIHIYLVIKFSECLLW 547
           +    E  +    S++ +H YL   F++   W
Sbjct: 205 RLCSLEFLLALKQSHMQLH-YLFTHFNDLFGW 235
>sp|P58281|OPA1_MOUSE Dynamin-like 120 kDa protein, mitochondrial precursor (Large GTP
           binding protein) (LargeG)
          Length = 960

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +1

Query: 25  NVAHKMSNCFYVLTKEYVVKT*EQFDIIE*QKTKKTSPTKCNENSYWINNYPCVYNLTRC 204
           N++  +S+CF+ + +E V +  + F             T+ N  + W NNYP +  L R 
Sbjct: 543 NLSLAVSDCFWKMVRESVEQQADSF-----------KATRFNLETEWKNNYPRLRELDRN 591

Query: 205 RIYDVEK 225
            +++  K
Sbjct: 592 ELFEKAK 598
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,707,823
Number of Sequences: 369166
Number of extensions: 1643745
Number of successful extensions: 3938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3938
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)