Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_N20
(720 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q89AP7|ILVI_BUCBP Acetolactate synthase large subunit (A... 33 1.0
sp|P30550|GRPR_HUMAN Gastrin-releasing peptide receptor (GR... 32 1.3
sp|P52500|GRPR_RAT Gastrin-releasing peptide receptor (GRP-... 32 1.7
sp|Q58842|YE47_METJA Hypothetical protein MJ1447 32 2.2
sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Tra... 32 2.2
sp|P21729|GRPR_MOUSE Gastrin-releasing peptide receptor (GR... 31 2.9
sp|P12223|YCF1B_MARPO Hypothetical 57 kDa protein ycf1 (ORF... 31 3.8
sp|O60313|OPA1_HUMAN Dynamin-like 120 kDa protein, mitochon... 30 6.5
sp|P58960|GR39B_DROME Putative gustatory receptor 39b 30 6.5
sp|P58281|OPA1_MOUSE Dynamin-like 120 kDa protein, mitochon... 30 6.5
>sp|Q89AP7|ILVI_BUCBP Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid
synthase large subunit) (ALS)
Length = 576
Score = 32.7 bits (73), Expect = 1.0
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 89 KSSSTLLNDKKRRKRRPQNVMKILTGLTIIHVFTT 193
KS ++L D+K +K +PQNV++I++ LT + F T
Sbjct: 358 KSKNSLEYDRKSKKIKPQNVIEIISALTNGNAFVT 392
>sp|P30550|GRPR_HUMAN Gastrin-releasing peptide receptor (GRP-R) (GRP-preferring bombesin
receptor)
Length = 384
Score = 32.3 bits (72), Expect = 1.3
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 257 DPTLKRILTSSLV-LILFTNNALNFFVYYISSTVFRR--NVVLLLIGEINKANIRQCHST 427
D ++ +TS L+ FTN+ +N F Y+ S FR+ N LL I + HST
Sbjct: 295 DTSMLHFVTSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLC---CQPGLIIRSHST 351
Query: 428 GGNTTKMVNL 457
G +TT M +L
Sbjct: 352 GRSTTCMTSL 361
>sp|P52500|GRPR_RAT Gastrin-releasing peptide receptor (GRP-R) (GRP-preferring bombesin
receptor)
Length = 384
Score = 32.0 bits (71), Expect = 1.7
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 257 DPTLKRILTSSLV-LILFTNNALNFFVYYISSTVFRR--NVVLLLIGEINKANIRQCHST 427
D ++ +TS L+ FTN+ +N F Y+ S FR+ N LL + + + HST
Sbjct: 296 DTSMLHFITSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLC---CQPSLLNRSHST 352
Query: 428 GGNTTKMVN 454
G +TT M +
Sbjct: 353 GRSTTCMTS 361
>sp|Q58842|YE47_METJA Hypothetical protein MJ1447
Length = 381
Score = 31.6 bits (70), Expect = 2.2
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 518 VIKFSECLLW---KKIINIEFCRYFSKGKCLENTFPNF*TFKHCILLNEKKN 664
+IKF E +L K I+N+ KG+ +ENTF N T +C+ N + N
Sbjct: 1 MIKFGEAVLGNEIKAIVNVAL----GKGELIENTFTNALTRGNCVFANLRPN 48
>sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Trace amine receptor 11)
(TaR-11)
Length = 344
Score = 31.6 bits (70), Expect = 2.2
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Frame = +2
Query: 77 LSKHKSSSTLLNDKKRRKRRPQNVMKILTGLTIIHVFTT*PGAGFTMLKSFFPFTLRKDD 256
+S K S+L + K R +R + K L G+T++ + S+ P+T+
Sbjct: 234 ISGSKGESSLESHKARVAKRERKAAKTL-GVTVV-----------AFMVSWLPYTIDTLI 281
Query: 257 DPTLKRILTSSLVLIL----FTNNALNFFVYYISSTVFRRNVVLLLIGEINKAN 406
D + I + + I + N+A+N +Y FR+ + L+L GEI K++
Sbjct: 282 DAFMGFITPAYVYEICCWSAYYNSAMNPLIYAFFYPWFRKAIKLILSGEILKSH 335
>sp|P21729|GRPR_MOUSE Gastrin-releasing peptide receptor (GRP-R) (GRP-preferring bombesin
receptor)
Length = 384
Score = 31.2 bits (69), Expect = 2.9
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +2
Query: 257 DPTLKRILTSSLV-LILFTNNALNFFVYYISSTVFRRNVVLLLI----GEINKANIRQCH 421
D ++ +TS L+ FTN+ +N F Y+ S FR+ L+ G +N++ H
Sbjct: 296 DTSMLHFVTSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLCCQPGLMNRS-----H 350
Query: 422 STGGNTTKMVN 454
STG +TT M +
Sbjct: 351 STGRSTTCMTS 361
>sp|P12223|YCF1B_MARPO Hypothetical 57 kDa protein ycf1 (ORF 464)
Length = 464
Score = 30.8 bits (68), Expect = 3.8
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = -1
Query: 333 TKKFNALFVKSISTKLEVKIRFNVGSSSFLSVNGKKLFNIVNPAPGQVVNTWIIVNPVRI 154
TKK N +F +++ T N+ +FL++N KK++N N ++ ++ I N
Sbjct: 126 TKKRNKIFKQNLLTYSCFDFTKNLAIRNFLNLNRKKIYN--NIIINKIQKSYFIYNKKAK 183
Query: 153 FITFCGRRFLRFLSFN 106
++ F ++ F +N
Sbjct: 184 YLDFFSQKQNIFFEYN 199
>sp|O60313|OPA1_HUMAN Dynamin-like 120 kDa protein, mitochondrial precursor (Optic
atrophy 1 gene protein)
Length = 960
Score = 30.0 bits (66), Expect = 6.5
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 25 NVAHKMSNCFYVLTKEYVVKT*EQFDIIE*QKTKKTSPTKCNENSYWINNYPCVYNLTRC 204
N++ +S+CF+ + +E V + + F T+ N + W NNYP + L R
Sbjct: 543 NLSLAVSDCFWKMVRESVEQQADSF-----------KATRFNLETEWKNNYPRLRELDRN 591
Query: 205 RIYDVEK 225
+++ K
Sbjct: 592 ELFEKAK 598
>sp|P58960|GR39B_DROME Putative gustatory receptor 39b
Length = 369
Score = 30.0 bits (66), Expect = 6.5
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +2
Query: 296 LILFTNNALNFFVYYISSTVFRRNVVLL-----LIGEINKANIRQCHSTGGNTTKMVNLN 460
L+ F ++ L+ + + + NV LL L+G I N+ +CH G N T N N
Sbjct: 146 LLYFWSSLLSILIIRMQFVLVLLNVELLGHHVSLLG-IRLQNVLECHLMGANCTLDGNAN 204
Query: 461 KQIDEEI*I---NSYLYIHIYLVIKFSECLLW 547
+ E + S++ +H YL F++ W
Sbjct: 205 RLCSLEFLLALKQSHMQLH-YLFTHFNDLFGW 235
>sp|P58281|OPA1_MOUSE Dynamin-like 120 kDa protein, mitochondrial precursor (Large GTP
binding protein) (LargeG)
Length = 960
Score = 30.0 bits (66), Expect = 6.5
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 25 NVAHKMSNCFYVLTKEYVVKT*EQFDIIE*QKTKKTSPTKCNENSYWINNYPCVYNLTRC 204
N++ +S+CF+ + +E V + + F T+ N + W NNYP + L R
Sbjct: 543 NLSLAVSDCFWKMVRESVEQQADSF-----------KATRFNLETEWKNNYPRLRELDRN 591
Query: 205 RIYDVEK 225
+++ K
Sbjct: 592 ELFEKAK 598
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,707,823
Number of Sequences: 369166
Number of extensions: 1643745
Number of successful extensions: 3938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3938
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)