Planaria EST Database


DrC_01483

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01483
         (903 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P87048|RPN1_SCHPO  26S proteasome regulatory subunit rpn1...    38   0.044
sp|Q6CJL0|SNF7_KLULA  Vacuolar sorting protein SNF7 (Vacuola...    36   0.13 
sp|P34618|CEC1_CAEEL  Chromo domain protein cec-1                  36   0.13 
sp|Q12114|CHS5_YEAST  Chitin biosynthesis protein CHS5 (Prot...    36   0.13 
sp|P36100|T2EA_YEAST  Transcription initiation factor IIE al...    35   0.38 
sp|Q8D8M2|FTSK_VIBVU  DNA translocase ftsK                         35   0.38 
sp|Q01042|IE68_SHV21  Immediate-early protein                      34   0.64 
sp|Q9SCY0|PGMP_ARATH  Phosphoglucomutase, chloroplast precur...    33   0.84 
sp|P20281|RS3_HALMA  30S ribosomal protein S3P (HmaS3) (HS1)       33   0.84 
sp|P23466|CYAA_SACKL  Adenylate cyclase (ATP pyrophosphate-l...    33   1.1  
>sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 (Proteasome non-ATPase
           subunit mts4) (19S regulatory cap region of 26S protease
           subunit 2)
          Length = 891

 Score = 37.7 bits (86), Expect = 0.044
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
 Frame = +2

Query: 176 DLSTQHISSNGNVT----TEAHESDDQSISNEIEIENGVEDVKEEE---------LIKMV 316
           D+S++  S N  +     T+  E++D++ +N  +  + +ED+ EE+         L++ V
Sbjct: 5   DISSKSPSGNDALNDKKGTKTSETNDRNSTNNTKERDELEDLSEEDLQLKNDLELLVQAV 64

Query: 317 SDAVDEIMGDAKSQVQHIVETPVSKDNSI 403
            DA  E++G + +Q++ I+ T  S   ++
Sbjct: 65  QDATPELVGSSLTQLKEIIRTSTSSMTAV 93
>sp|Q6CJL0|SNF7_KLULA Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
           protein VPS32)
          Length = 232

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = +2

Query: 8   NVEKESSDHK*NISSDVMLEDEFKPVEDLAEETKTSAEHTEPIQNSEITENSI-----VD 172
           N E   +  K  I  D + EDE     +L E      EH  P+   +I + SI      D
Sbjct: 137 NQEISEAISKPLILQDELDEDELDQELELLESENLQKEHIAPVPQQQIQQPSIDLPSVPD 196

Query: 173 IDLSTQHISSNGNVTTEAHESDDQSISNEIEIENGV 280
           + LST  ++S      +  E +D+    E++ E G+
Sbjct: 197 VKLSTPELNSAQADEEDEEEDEDERALRELQAEMGL 232
>sp|P34618|CEC1_CAEEL Chromo domain protein cec-1
          Length = 304

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
 Frame = +2

Query: 2   DENVEKESSDHK*NISSDVMLEDEFKPVEDLAEETKTSAEHTEPIQNSEITENSIV---- 169
           D + E  S+D K     +  +ED+ +PV    +E +   E  E ++  +  E+  V    
Sbjct: 127 DTDEEHSSADKKSKAEDEEEVEDDEEPVPKKKKEVQEEPEEEESVEGEDEEESQEVEDLK 186

Query: 170 -DIDLSTQHISSNGNVTTEAHESDDQSISNEIEIENGVEDVKEEELIKMV 316
            D  +         +V  E+ +++ +    ++E +   E+ +EEE I++V
Sbjct: 187 EDEKMEEDEKEEEEDVQLESEKNEKEEEEEKVEEKKEEEEEEEEEEIQLV 236
>sp|Q12114|CHS5_YEAST Chitin biosynthesis protein CHS5 (Protein CAL3)
          Length = 671

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
 Frame = +2

Query: 62  LEDEFKPVEDLAEETKTSAEHTEPIQNSEITENSIVDIDLSTQHISSNGNVTTEAHESDD 241
           +ED  +PVED  E  + + E T  I +    E    DI+L  +   +  +V  E    D 
Sbjct: 527 VEDTSEPVEDAGEPVQETNEFTTDIASPRHQEE---DIELEAEPKDATESVAVEPSNEDV 583

Query: 242 QSISNEIEIENGVEDVKE-----EELIKMVSDAVDEIMGDAKSQVQHIVETPVSKDNSID 406
           +      E E+ + +V +     E      ++A   +   A ++ Q   E  V+ D+ + 
Sbjct: 584 KPEEKGSEAEDDINNVSKEAASGESTTHQKTEASASLESSAVTEEQETTEAEVNTDDVLS 643

Query: 407 TLE 415
           T E
Sbjct: 644 TKE 646
>sp|P36100|T2EA_YEAST Transcription initiation factor IIE alpha subunit (TFIIE-alpha)
           (Transcription factor A large subunit) (Factor A 66 kDa
           subunit)
          Length = 482

 Score = 34.7 bits (78), Expect = 0.38
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
 Frame = +2

Query: 2   DENVEKESS-----DHK*NISSDVMLEDEFKPVEDLAEETKTSAEHTEPIQNSEITENSI 166
           DE  E+E       D     + +  LEDEF+ V D A   KT +  +  ++   I + + 
Sbjct: 384 DEEEEEEEEMEDVMDDNDETARENALEDEFEDVTDTAGTAKTESNTSNDVKQESINDKTE 443

Query: 167 VDIDLSTQHISSNGNVTTEAHESDDQSISNEIEIENGVEDV 289
             ++ +      + N      + DD    +E++IE   EDV
Sbjct: 444 DAVNATATASGPSANAKPNDGDDDDDDDDDEMDIE--FEDV 482
>sp|Q8D8M2|FTSK_VIBVU DNA translocase ftsK
          Length = 990

 Score = 34.7 bits (78), Expect = 0.38
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
 Frame = +2

Query: 5   ENVEKESSDHK*NISSDVMLEDEFKPVEDLAEETKTSAEHTEPIQNSEITENSIVDIDLS 184
           E+ +    +H  + S DV   +EF  V  L+E  K S E  EP+            +  +
Sbjct: 341 EHSQTTQVEHAQDFSVDV---EEFDHVISLSELDKISEEIDEPVM-----------VGFA 386

Query: 185 TQHISSNGNVTTEAHESDDQSISNEIEIENGVEDVKEEELIKM-VSDAVDEIMGDAKSQV 361
            +    +      A  S  + + + + +E   +   +EE++ + V+D+V    GD   ++
Sbjct: 387 EEAPLHHNEAQRSAMASSAEPMFSHLGVEQTTQHTTQEEIVDLPVADSV----GDVNPEM 442

Query: 362 QHIVETPVSKDNSIDTLEN*ISK 430
           +  VE    +D  +   +N +SK
Sbjct: 443 EDYVEEDEDQDQDVVAFQNMVSK 465
>sp|Q01042|IE68_SHV21 Immediate-early protein
          Length = 407

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 24/111 (21%), Positives = 48/111 (43%)
 Frame = +2

Query: 2   DENVEKESSDHK*NISSDVMLEDEFKPVEDLAEETKTSAEHTEPIQNSEITENSIVDIDL 181
           +E  E+E ++ +    ++   E+E +  E+ AEE +   E  E  + +E  E    +   
Sbjct: 130 EEEAEEEEAEEE---EAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAE 186

Query: 182 STQHISSNGNVTTEAHESDDQSISNEIEIENGVEDVKEEELIKMVSDAVDE 334
             +          EA E+++++   E E E   E  + EE  +   +A +E
Sbjct: 187 EAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEEAEEAEEAEEEAEEAEEE 237

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 25/111 (22%), Positives = 46/111 (41%)
 Frame = +2

Query: 2   DENVEKESSDHK*NISSDVMLEDEFKPVEDLAEETKTSAEHTEPIQNSEITENSIVDIDL 181
           +E  EKE+ + +   + +   E+E +  E  AEE +   E  E  +  E  E    + + 
Sbjct: 99  EEAEEKEAEEEEAEEAEEEAEEEEAEEAE--AEEEEAEEEEAEEEEAEEAEEEEAEEAEE 156

Query: 182 STQHISSNGNVTTEAHESDDQSISNEIEIENGVEDVKEEELIKMVSDAVDE 334
             +   +      EA E+++     E E E   E  + EE  +   +A +E
Sbjct: 157 EAEEEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEAEEEAEEAEEE 207
>sp|Q9SCY0|PGMP_ARATH Phosphoglucomutase, chloroplast precursor (Glucose phosphomutase)
           (PGM)
          Length = 623

 Score = 33.5 bits (75), Expect = 0.84
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
 Frame = +2

Query: 95  AEETKTSAEHTEPIQNSEITENSIVDIDLSTQHISSNGNVTTEAHESDDQSISNEIEIEN 274
           A ET T   +   +  SEI    I DIDLS   ++  GN + E  +     +S+ +E+  
Sbjct: 203 APETITDKIYGNTLSISEIKVAEIPDIDLSQVGVTKYGNFSVEVID----PVSDYLEL-- 256

Query: 275 GVEDVKEEELIK-MVSDAVDEIMGDAKSQVQHIVETPVSKDN 397
            +EDV + +LI+ ++S +    M DA   V      P+  DN
Sbjct: 257 -MEDVFDFDLIRGLLSRSDFGFMFDAMHAVTGAYAKPIFVDN 297
>sp|P20281|RS3_HALMA 30S ribosomal protein S3P (HmaS3) (HS1)
          Length = 304

 Score = 33.5 bits (75), Expect = 0.84
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
 Frame = +2

Query: 44  ISSDVMLEDEFKPVEDLAEE---TKTSAEHTEPIQNSEITENSIVDIDLSTQHISSNGNV 214
           I  +  L D+F+  ED+  E     T  E  E +   E  E+S    +L  + +++  + 
Sbjct: 183 IPPNAELPDDFEIYEDVDVEDYVADTDGESVEELLEGE-PEDSETAEELD-EDVAAGADD 240

Query: 215 TTEAHES--DDQSISNEIEI--ENGVEDVKEEELIKMVSDAVDEIMGDAKSQVQHIVE 376
            +EA E   D++ +  ++E+  ++ VEDV  +EL + V + +DE   D +++ + +++
Sbjct: 241 DSEADEEFVDEEIVEEDVEVPTDDDVEDVDVDELEEAVDEELDE---DVEAEAEELMD 295
>sp|P23466|CYAA_SACKL Adenylate cyclase (ATP pyrophosphate-lyase) (Adenylyl cyclase)
          Length = 1839

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +2

Query: 17  KESSDHK*NISSDVMLEDEFKPVEDLAEETKTSAEHTEPIQNSE-ITENSIVDIDLSTQH 193
           K  S+    I    ++E E +P E   +   T +   + ++ ++ I E+S +    STQ 
Sbjct: 353 KHYSNFSKPIEDKAVVEKEQEPPEKCPQPISTDSNDAQGLEIAKPIDESSGIQHSASTQS 412

Query: 194 ISSNGNVTTEAHESDDQSISNEIEIENGVEDVKEEE 301
           +SS  +  T A  +  + I  + E E+ +  V E+E
Sbjct: 413 VSSFSSGATGASGATGKQIGGDQETESTISTVGEDE 448
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,330,583
Number of Sequences: 369166
Number of extensions: 1295638
Number of successful extensions: 4188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4170
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)