Planaria EST Database


DrC_01482

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01482
         (449 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RAC9|EX7L_THETN  Probable exodeoxyribonuclease VII larg...    31   1.5  
sp|Q980Q3|GATB_SULSO  Aspartyl/glutamyl-tRNA(Asn/Gln) amidot...    31   1.5  
sp|P62134|RAD50_METMP  DNA double-strand break repair rad50 ...    30   2.5  
sp|Q92HA7|UVRC_RICCN  UvrABC system protein C (UvrC protein)...    29   4.2  
sp|O78431|YCX3_GUITH  HYPOTHETICAL 30.1 KD PROTEIN (ORF252)        29   5.5  
sp|P48849|RMAR_PICCA  Mitochondrial ribosomal protein VAR1         28   7.2  
sp|Q57878|Y436_METJA  Hypothetical protein MJ0436                  28   9.4  
sp|P61243|YCF2_PHYPA  Protein ycf2                                 28   9.4  
>sp|Q8RAC9|EX7L_THETN Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
           large subunit)
          Length = 404

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -2

Query: 271 YTNN--QTNKISKLKLENIKQFLTKTKIELFEYLKQELIPIS 152
           Y NN  + N++ K +++N+K+ LTK  + +F   K EL+ ++
Sbjct: 301 YLNNPIKKNEVLKQRVKNLKKSLTKEMLSIFNQKKNELLVLN 342
>sp|Q980Q3|GATB_SULSO Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
           (Asp/Glu-ADT subunit B)
          Length = 472

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 23/59 (38%), Positives = 28/59 (47%)
 Frame = -2

Query: 322 NY*VIIDILIQKYFINYYTNNQTNKISKLKLENIKQFLTKTKIELFEYLKQELIPISIL 146
           NY  + ++LI  Y      NN T   SK K  +I        IELFEYL   LI I I+
Sbjct: 334 NYAKVANLLINDYMRWLNENNITVTQSKAKANHI--------IELFEYLDSGLISIKIV 384
>sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ATPase
          Length = 993

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
 Frame = -2

Query: 283 FINYYTNNQTNKIS-KLKLENIKQFLTKTKIELF------EYLKQELIPI 155
           ++N    N +NK   K K+E  K++L K K E+F      +YL+++ IP+
Sbjct: 819 YLNEKIQNLSNKKEEKKKIEEFKEYLDKIKREIFSKDGFQKYLREKYIPL 868
>sp|Q92HA7|UVRC_RICCN UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
          Length = 639

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 19  FQEKYSILLNPCYEFIYVKLRL 84
           FQ K++ILL  C  F ++KLRL
Sbjct: 91  FQPKFNILLKDCKSFPFIKLRL 112
>sp|O78431|YCX3_GUITH HYPOTHETICAL 30.1 KD PROTEIN (ORF252)
          Length = 252

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 215 LLNVF*LQLTDFIGLIISIVIYKIFLN*NINYYLVVVTFN*KMMHSFLN 361
           L+ VF L L +++ LII  V Y+I +N   N++L   +F+ + +    N
Sbjct: 38  LITVFPLDLLNYLSLIIIDVYYEICINYPNNFWLDSTSFDSRFLFILQN 86
>sp|P48849|RMAR_PICCA Mitochondrial ribosomal protein VAR1
          Length = 386

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = -2

Query: 328 SNNY*VIIDILIQKYFINYYTNNQTNKISKLKLENIKQFLTKTKIELFEYLKQELIPISI 149
           +NNY   IDI I+ ++IN Y N  T      KL+ I + +     +L+++ K+ +I   I
Sbjct: 13  TNNYIKNIDISIKDHYINEYNNKGT------KLQRINK-INSWDNQLYKFNKKNVINTWI 65

Query: 148 L 146
           L
Sbjct: 66  L 66
>sp|Q57878|Y436_METJA Hypothetical protein MJ0436
          Length = 550

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 310 IIDILIQKYFINYYTNNQTNKISKLKLENIKQF 212
           I+DI+   Y+INY++ N+      L++  + Q+
Sbjct: 375 ILDIMTYNYYINYFSANKKINADALRIRKMLQY 407
>sp|P61243|YCF2_PHYPA Protein ycf2
          Length = 2259

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -2

Query: 301  ILIQKYFINYYTNNQ------TNKISKLKLENIKQFLTKTKI 194
            IL  K+ INY+ NNQ       N I  L L+N K +    ++
Sbjct: 942  ILTTKFLINYFNNNQIYLESFNNNIFSLILQNQKSYFNSIQM 983
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,667,668
Number of Sequences: 369166
Number of extensions: 590766
Number of successful extensions: 1310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)