Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_M11
(449 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8RAC9|EX7L_THETN Probable exodeoxyribonuclease VII larg... 31 1.5
sp|Q980Q3|GATB_SULSO Aspartyl/glutamyl-tRNA(Asn/Gln) amidot... 31 1.5
sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ... 30 2.5
sp|Q92HA7|UVRC_RICCN UvrABC system protein C (UvrC protein)... 29 4.2
sp|O78431|YCX3_GUITH HYPOTHETICAL 30.1 KD PROTEIN (ORF252) 29 5.5
sp|P48849|RMAR_PICCA Mitochondrial ribosomal protein VAR1 28 7.2
sp|Q57878|Y436_METJA Hypothetical protein MJ0436 28 9.4
sp|P61243|YCF2_PHYPA Protein ycf2 28 9.4
>sp|Q8RAC9|EX7L_THETN Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
Length = 404
Score = 30.8 bits (68), Expect = 1.5
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -2
Query: 271 YTNN--QTNKISKLKLENIKQFLTKTKIELFEYLKQELIPIS 152
Y NN + N++ K +++N+K+ LTK + +F K EL+ ++
Sbjct: 301 YLNNPIKKNEVLKQRVKNLKKSLTKEMLSIFNQKKNELLVLN 342
>sp|Q980Q3|GATB_SULSO Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
(Asp/Glu-ADT subunit B)
Length = 472
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/59 (38%), Positives = 28/59 (47%)
Frame = -2
Query: 322 NY*VIIDILIQKYFINYYTNNQTNKISKLKLENIKQFLTKTKIELFEYLKQELIPISIL 146
NY + ++LI Y NN T SK K +I IELFEYL LI I I+
Sbjct: 334 NYAKVANLLINDYMRWLNENNITVTQSKAKANHI--------IELFEYLDSGLISIKIV 384
>sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ATPase
Length = 993
Score = 30.0 bits (66), Expect = 2.5
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Frame = -2
Query: 283 FINYYTNNQTNKIS-KLKLENIKQFLTKTKIELF------EYLKQELIPI 155
++N N +NK K K+E K++L K K E+F +YL+++ IP+
Sbjct: 819 YLNEKIQNLSNKKEEKKKIEEFKEYLDKIKREIFSKDGFQKYLREKYIPL 868
>sp|Q92HA7|UVRC_RICCN UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
Length = 639
Score = 29.3 bits (64), Expect = 4.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 19 FQEKYSILLNPCYEFIYVKLRL 84
FQ K++ILL C F ++KLRL
Sbjct: 91 FQPKFNILLKDCKSFPFIKLRL 112
>sp|O78431|YCX3_GUITH HYPOTHETICAL 30.1 KD PROTEIN (ORF252)
Length = 252
Score = 28.9 bits (63), Expect = 5.5
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 215 LLNVF*LQLTDFIGLIISIVIYKIFLN*NINYYLVVVTFN*KMMHSFLN 361
L+ VF L L +++ LII V Y+I +N N++L +F+ + + N
Sbjct: 38 LITVFPLDLLNYLSLIIIDVYYEICINYPNNFWLDSTSFDSRFLFILQN 86
>sp|P48849|RMAR_PICCA Mitochondrial ribosomal protein VAR1
Length = 386
Score = 28.5 bits (62), Expect = 7.2
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = -2
Query: 328 SNNY*VIIDILIQKYFINYYTNNQTNKISKLKLENIKQFLTKTKIELFEYLKQELIPISI 149
+NNY IDI I+ ++IN Y N T KL+ I + + +L+++ K+ +I I
Sbjct: 13 TNNYIKNIDISIKDHYINEYNNKGT------KLQRINK-INSWDNQLYKFNKKNVINTWI 65
Query: 148 L 146
L
Sbjct: 66 L 66
>sp|Q57878|Y436_METJA Hypothetical protein MJ0436
Length = 550
Score = 28.1 bits (61), Expect = 9.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 310 IIDILIQKYFINYYTNNQTNKISKLKLENIKQF 212
I+DI+ Y+INY++ N+ L++ + Q+
Sbjct: 375 ILDIMTYNYYINYFSANKKINADALRIRKMLQY 407
>sp|P61243|YCF2_PHYPA Protein ycf2
Length = 2259
Score = 28.1 bits (61), Expect = 9.4
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = -2
Query: 301 ILIQKYFINYYTNNQ------TNKISKLKLENIKQFLTKTKI 194
IL K+ INY+ NNQ N I L L+N K + ++
Sbjct: 942 ILTTKFLINYFNNNQIYLESFNNNIFSLILQNQKSYFNSIQM 983
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,667,668
Number of Sequences: 369166
Number of extensions: 590766
Number of successful extensions: 1310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)