Planaria EST Database


DrC_01479

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01479
         (938 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9S3Q5|MQO_PSEFL  Probable malate:quinone oxidoreductase ...    31   5.8  
sp|Q92J40|RECN_RICCN  DNA repair protein recN (Recombination...    30   7.5  
sp|Q9UJW2|TINAG_HUMAN  Tubulointerstitial nephritis antigen ...    30   9.8  
>sp|Q9S3Q5|MQO_PSEFL Probable malate:quinone oxidoreductase (Malate dehydrogenase
           [acceptor]) (MQO)
          Length = 505

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 468 SPSIAIRQINRERNLIKNPCTYLAVIKLIRKFEKTGSVLNIP-HVRLSLVSGRKTVIKDA 644
           SP +++  +    ++ +NPC +        KF K GS++++P  VR   +     V +D 
Sbjct: 297 SPPMSVPHLTPVWSMARNPCLFGPYAGFTTKFLKHGSIMDLPLSVRAGNIGPMLAVARDN 356

Query: 645 LD 650
           +D
Sbjct: 357 MD 358
>sp|Q92J40|RECN_RICCN DNA repair protein recN (Recombination protein N)
          Length = 545

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
 Frame = +3

Query: 393 KNIINMHMNL-DFKIDIIRCYYANSNSPSIAIRQINRERNLIKNPCTYL--AVIKLIRKF 563
           ++I++ + NL DF+ ++ +CY A  N+    + +I  ++N I+    YL  A  +L +  
Sbjct: 141 RDILDSYGNLLDFRAELSKCYQAWQNTRK-EMAEITLKQNSIEQEIDYLSFATEELTKLN 199

Query: 564 EKTGSVLNIPHVRLSLVSGRK--TVIKDALDYNNG---KTSIRR 680
            +TG    + ++R  L +  K   +IKD ++  N     TSI R
Sbjct: 200 IQTGEEEKLANLRKDLQNKDKDLQLIKDIIEQINNPEINTSINR 243
>sp|Q9UJW2|TINAG_HUMAN Tubulointerstitial nephritis antigen (TIN-Ag)
          Length = 476

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 731 N*NSLNRGWWNISFRG*SSNGCFTIIIIQCIFNNG 627
           N  S++R WW +  RG  S+ C+ +   Q   NNG
Sbjct: 285 NSGSIDRAWWYLRKRGLVSHACYPLFKDQNATNNG 319
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,308,041
Number of Sequences: 369166
Number of extensions: 1794312
Number of successful extensions: 3058
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3058
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)