Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_M02
(938 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9S3Q5|MQO_PSEFL Probable malate:quinone oxidoreductase ... 31 5.8
sp|Q92J40|RECN_RICCN DNA repair protein recN (Recombination... 30 7.5
sp|Q9UJW2|TINAG_HUMAN Tubulointerstitial nephritis antigen ... 30 9.8
>sp|Q9S3Q5|MQO_PSEFL Probable malate:quinone oxidoreductase (Malate dehydrogenase
[acceptor]) (MQO)
Length = 505
Score = 30.8 bits (68), Expect = 5.8
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 468 SPSIAIRQINRERNLIKNPCTYLAVIKLIRKFEKTGSVLNIP-HVRLSLVSGRKTVIKDA 644
SP +++ + ++ +NPC + KF K GS++++P VR + V +D
Sbjct: 297 SPPMSVPHLTPVWSMARNPCLFGPYAGFTTKFLKHGSIMDLPLSVRAGNIGPMLAVARDN 356
Query: 645 LD 650
+D
Sbjct: 357 MD 358
>sp|Q92J40|RECN_RICCN DNA repair protein recN (Recombination protein N)
Length = 545
Score = 30.4 bits (67), Expect = 7.5
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Frame = +3
Query: 393 KNIINMHMNL-DFKIDIIRCYYANSNSPSIAIRQINRERNLIKNPCTYL--AVIKLIRKF 563
++I++ + NL DF+ ++ +CY A N+ + +I ++N I+ YL A +L +
Sbjct: 141 RDILDSYGNLLDFRAELSKCYQAWQNTRK-EMAEITLKQNSIEQEIDYLSFATEELTKLN 199
Query: 564 EKTGSVLNIPHVRLSLVSGRK--TVIKDALDYNNG---KTSIRR 680
+TG + ++R L + K +IKD ++ N TSI R
Sbjct: 200 IQTGEEEKLANLRKDLQNKDKDLQLIKDIIEQINNPEINTSINR 243
>sp|Q9UJW2|TINAG_HUMAN Tubulointerstitial nephritis antigen (TIN-Ag)
Length = 476
Score = 30.0 bits (66), Expect = 9.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 731 N*NSLNRGWWNISFRG*SSNGCFTIIIIQCIFNNG 627
N S++R WW + RG S+ C+ + Q NNG
Sbjct: 285 NSGSIDRAWWYLRKRGLVSHACYPLFKDQNATNNG 319
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,308,041
Number of Sequences: 369166
Number of extensions: 1794312
Number of successful extensions: 3058
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3058
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)