Planaria EST Database


DrC_01478

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01478
         (195 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86ZC1|KINH_BOTCI  Kinesin heavy chain                          30   2.3  
sp|P53811|PIPNB_MOUSE  Phosphatidylinositol transfer protein...    29   3.9  
sp|P53812|PIPNB_RAT  Phosphatidylinositol transfer protein b...    29   3.9  
sp|P48739|PIPNB_HUMAN  Phosphatidylinositol transfer protein...    29   3.9  
sp|O53735|MML4_MYCTU  Putative membrane protein mmpL4              28   6.6  
sp|Q88VE9|UVRC_LACPL  UvrABC system protein C (UvrC protein)...    28   6.6  
sp|Q8IYF1|ELOA2_HUMAN  RNA polymerase II transcription facto...    28   6.6  
sp|Q9UMN6|MLL4_HUMAN  Myeloid/lymphoid or mixed-lineage leuk...    28   8.7  
>sp|Q86ZC1|KINH_BOTCI Kinesin heavy chain
          Length = 880

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 2   EVLMNLLPRYNSNNDEKSEPPPTWMKEVAQRRRSKESIQDVQKKWDEHIRTG--GDGSAP 175
           E+   L   Y++N D K E      KEVAQ+    E  + V +   + +++G   +G+AP
Sbjct: 665 EIKERLEKAYSNNQDIKVELVEDLKKEVAQKSAEIEKFKAVNEDLQQRVKSGSASNGTAP 724
>sp|P53811|PIPNB_MOUSE Phosphatidylinositol transfer protein beta isoform (PtdIns transfer
           protein beta) (PtdInsTP) (PI-TP-beta)
          Length = 271

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 181 YPWCRTITTCSYMFIPFFLDI 119
           YP+CRTI T  YM   FF+ I
Sbjct: 91  YPYCRTIVTNEYMKDDFFIKI 111
>sp|P53812|PIPNB_RAT Phosphatidylinositol transfer protein beta isoform (PtdIns transfer
           protein beta) (PtdInsTP) (PI-TP-beta)
          Length = 271

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 181 YPWCRTITTCSYMFIPFFLDI 119
           YP+CRTI T  YM   FF+ I
Sbjct: 91  YPYCRTIVTNEYMKDDFFIKI 111
>sp|P48739|PIPNB_HUMAN Phosphatidylinositol transfer protein beta isoform (PtdIns transfer
           protein beta) (PtdInsTP) (PI-TP-beta)
          Length = 271

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 181 YPWCRTITTCSYMFIPFFLDI 119
           YP+CRTI T  YM   FF+ I
Sbjct: 91  YPYCRTIVTNEYMKDDFFIKI 111
>sp|O53735|MML4_MYCTU Putative membrane protein mmpL4
          Length = 967

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +2

Query: 83  VAQRRRSKESIQDVQKKWDEHIRTGG----DGSAPWIQ 184
           VAQ R  K+ +Q VQ  W + +   G    DG A ++Q
Sbjct: 109 VAQLRADKKHVQSVQDLWGDPLTAAGVQSNDGKAAYVQ 146
>sp|Q88VE9|UVRC_LACPL UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
          Length = 604

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 49  KIRTSTYMDERSSTKASIKRIYTRCPKK 132
           K+RT  + DE +ST+  I+R YTR  K+
Sbjct: 416 KLRTVDHADEAASTREVIRRRYTRLLKE 443
>sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 (Elongin A2)
           (EloA2) (Transcription elongation factor B polypeptide
           3B)
          Length = 753

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 44  DEKSEPPPTWMKEVAQRRRSKESIQDVQKKW 136
           D  + P P   +E A R+R  E++QD +K W
Sbjct: 80  DRNTRPGPQDPEESASRQRFGEALQDQEKAW 110
>sp|Q9UMN6|MLL4_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 4 (Trithorax
           homolog 2)
          Length = 2715

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 44  DEKSEPPPTWMKEVAQRRRSKESIQDVQKKWDEHIRTGGDGSAP 175
           +E+ E PP  +     R+R +  +   Q+   E  R G +G++P
Sbjct: 451 EEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARAGPEGTSP 494
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,004,719
Number of Sequences: 369166
Number of extensions: 420593
Number of successful extensions: 1389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 68,354,980
effective HSP length: 36
effective length of database: 61,704,520
effective search space used: 1727726560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)