Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L20
(195 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86ZC1|KINH_BOTCI Kinesin heavy chain 30 2.3
sp|P53811|PIPNB_MOUSE Phosphatidylinositol transfer protein... 29 3.9
sp|P53812|PIPNB_RAT Phosphatidylinositol transfer protein b... 29 3.9
sp|P48739|PIPNB_HUMAN Phosphatidylinositol transfer protein... 29 3.9
sp|O53735|MML4_MYCTU Putative membrane protein mmpL4 28 6.6
sp|Q88VE9|UVRC_LACPL UvrABC system protein C (UvrC protein)... 28 6.6
sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription facto... 28 6.6
sp|Q9UMN6|MLL4_HUMAN Myeloid/lymphoid or mixed-lineage leuk... 28 8.7
>sp|Q86ZC1|KINH_BOTCI Kinesin heavy chain
Length = 880
Score = 29.6 bits (65), Expect = 2.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 2 EVLMNLLPRYNSNNDEKSEPPPTWMKEVAQRRRSKESIQDVQKKWDEHIRTG--GDGSAP 175
E+ L Y++N D K E KEVAQ+ E + V + + +++G +G+AP
Sbjct: 665 EIKERLEKAYSNNQDIKVELVEDLKKEVAQKSAEIEKFKAVNEDLQQRVKSGSASNGTAP 724
>sp|P53811|PIPNB_MOUSE Phosphatidylinositol transfer protein beta isoform (PtdIns transfer
protein beta) (PtdInsTP) (PI-TP-beta)
Length = 271
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 181 YPWCRTITTCSYMFIPFFLDI 119
YP+CRTI T YM FF+ I
Sbjct: 91 YPYCRTIVTNEYMKDDFFIKI 111
>sp|P53812|PIPNB_RAT Phosphatidylinositol transfer protein beta isoform (PtdIns transfer
protein beta) (PtdInsTP) (PI-TP-beta)
Length = 271
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 181 YPWCRTITTCSYMFIPFFLDI 119
YP+CRTI T YM FF+ I
Sbjct: 91 YPYCRTIVTNEYMKDDFFIKI 111
>sp|P48739|PIPNB_HUMAN Phosphatidylinositol transfer protein beta isoform (PtdIns transfer
protein beta) (PtdInsTP) (PI-TP-beta)
Length = 271
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 181 YPWCRTITTCSYMFIPFFLDI 119
YP+CRTI T YM FF+ I
Sbjct: 91 YPYCRTIVTNEYMKDDFFIKI 111
>sp|O53735|MML4_MYCTU Putative membrane protein mmpL4
Length = 967
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +2
Query: 83 VAQRRRSKESIQDVQKKWDEHIRTGG----DGSAPWIQ 184
VAQ R K+ +Q VQ W + + G DG A ++Q
Sbjct: 109 VAQLRADKKHVQSVQDLWGDPLTAAGVQSNDGKAAYVQ 146
>sp|Q88VE9|UVRC_LACPL UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
Length = 604
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 49 KIRTSTYMDERSSTKASIKRIYTRCPKK 132
K+RT + DE +ST+ I+R YTR K+
Sbjct: 416 KLRTVDHADEAASTREVIRRRYTRLLKE 443
>sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 (Elongin A2)
(EloA2) (Transcription elongation factor B polypeptide
3B)
Length = 753
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 44 DEKSEPPPTWMKEVAQRRRSKESIQDVQKKW 136
D + P P +E A R+R E++QD +K W
Sbjct: 80 DRNTRPGPQDPEESASRQRFGEALQDQEKAW 110
>sp|Q9UMN6|MLL4_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 4 (Trithorax
homolog 2)
Length = 2715
Score = 27.7 bits (60), Expect = 8.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 44 DEKSEPPPTWMKEVAQRRRSKESIQDVQKKWDEHIRTGGDGSAP 175
+E+ E PP + R+R + + Q+ E R G +G++P
Sbjct: 451 EEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARAGPEGTSP 494
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,004,719
Number of Sequences: 369166
Number of extensions: 420593
Number of successful extensions: 1389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 68,354,980
effective HSP length: 36
effective length of database: 61,704,520
effective search space used: 1727726560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)