Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01476
(317 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NEN9|PDZK8_HUMAN PDZ domain containing protein 8 (Sarc... 30 2.2
sp|Q7JLI1|NAS31_CAEEL Zinc metalloproteinase nas-31 precurs... 29 3.8
sp|Q73RJ6|SYC_TREDE Cysteinyl-tRNA synthetase (Cysteine--tR... 28 6.5
>sp|Q8NEN9|PDZK8_HUMAN PDZ domain containing protein 8 (Sarcoma antigen
NY-SAR-84/NY-SAR-104)
Length = 1154
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 4 SFSDSQVEGSYRYRYCKSICKRHYNYCVNQCGFFEFFCKSRCKDR 138
SF D+Q + YCK K+ + +QC F + C +C+++
Sbjct: 842 SFQDTQFQNPTWCDYCK---KKVWTKAASQCMFCAYVCHKKCQEK 883
>sp|Q7JLI1|NAS31_CAEEL Zinc metalloproteinase nas-31 precursor (Nematode astacin 31)
Length = 611
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 94 CGFFEFFCKSRCKDRYKSCKFTC 162
C F++FF R K +CKFTC
Sbjct: 539 CDFYKFFGMCRSKKIRSNCKFTC 561
>sp|Q73RJ6|SYC_TREDE Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 492
Score = 28.1 bits (61), Expect = 6.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 167 ILHVNLQDL*RSLHLDLQKNSKNPH 93
+ ++NL+DL +++ KN +NPH
Sbjct: 165 LANINLEDLKAGARIEIDKNKRNPH 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,649,016
Number of Sequences: 369166
Number of extensions: 466358
Number of successful extensions: 1038
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)