Planaria EST Database


DrC_01473

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01473
         (732 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7T339|CHMP5_BRARE  Charged multivesicular body protein 5...   193   3e-49
sp|Q9D7S9|CHMP5_MOUSE  Charged multivesicular body protein 5...   187   2e-47
sp|Q5FW29|CHMP5_XENTR  Charged multivesicular body protein 5...   186   7e-47
sp|Q5RBR3|CHMP5_PONPY  Charged multivesicular body protein 5...   185   1e-46
sp|Q6DD52|CHMP5_XENLA  Charged multivesicular body protein 5...   184   3e-46
sp|Q03390|VPS60_YEAST  Vacuolar protein sorting-associated p...    56   9e-08
sp|Q6FW96|SNF7_CANGA  Vacuolar sorting protein SNF7 (Vacuola...    44   6e-04
sp|Q6CJL0|SNF7_KLULA  Vacuolar sorting protein SNF7 (Vacuola...    43   0.001
sp|Q9P7F7|SNF7_SCHPO  Vacuolar sorting protein snf7 (Vacuola...    41   0.003
sp|Q753W3|SNF7_ASHGO  Vacuolar sorting protein SNF7 (Vacuola...    41   0.003
>sp|Q7T339|CHMP5_BRARE Charged multivesicular body protein 5 (Chromatin modifying protein
           5)
          Length = 220

 Score =  193 bits (491), Expect = 3e-49
 Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
 Frame = +1

Query: 49  SRGESVDKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQ 228
           SR ESVDKKI RLD EL KY++QMKKMRDGP+KNM+KQKA+RVLKQKR+YE QR+QL  Q
Sbjct: 26  SRAESVDKKIARLDAELMKYKDQMKKMRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQ 85

Query: 229 SFNLEQANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQASEI 408
           SFN+EQAN+ IQT+KDTK+ V+AMKIG K  KK +KN+              M E A+E+
Sbjct: 86  SFNMEQANYTIQTLKDTKTTVEAMKIGAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEV 145

Query: 409 QEVLGRTYDMPXXXXXXXXXXXXXXXXXIGI-GEGSYLDDALNVPGVPSTNPGESTVAPG 585
           QE L R+Y  P                 + +  + SYLD+A + P +P   PG+ T    
Sbjct: 146 QEALSRSYGTPEIDEDDLEAELDALGDELLLDDDNSYLDEASSAPAIPEGAPGDRTTNRD 205

Query: 586 ELAVDEFGLPKIP 624
            + VDEFGLP+IP
Sbjct: 206 GVLVDEFGLPQIP 218
>sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 (Chromatin modifying protein
           5) (SNF7 domain-containing protein 2)
 sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 (Chromatin modifying protein
           5)
          Length = 219

 Score =  187 bits (475), Expect = 2e-47
 Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
 Frame = +1

Query: 49  SRGESVDKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQ 228
           SR ES+DKKI RLD EL KY++Q+KKMR+GPAKNM+KQKALRVLKQKR+YE QR+ L+ Q
Sbjct: 26  SRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQ 85

Query: 229 SFNLEQANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQASEI 408
           SFN+EQAN+ IQ++KDTK+ VDAMK+GVK  KK +K +              M E A+EI
Sbjct: 86  SFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEI 145

Query: 409 QEVLGRTYDMPXXXXXXXXXXXXXXXXXIGIGE-GSYLDDALNVPGVPSTNPGESTVAPG 585
           QE LGR+Y  P                 +   E  SYLD+A + P +P   P ++    G
Sbjct: 146 QEALGRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDTKNKDG 205

Query: 586 ELAVDEFGLPKIP 624
            L VDEFGLP+IP
Sbjct: 206 VL-VDEFGLPQIP 217
>sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 (Chromatin modifying protein
           5)
          Length = 219

 Score =  186 bits (471), Expect = 7e-47
 Identities = 98/193 (50%), Positives = 125/193 (64%), Gaps = 1/193 (0%)
 Frame = +1

Query: 49  SRGESVDKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQ 228
           SR ES+DKKI RLD EL KY++QMKKMR+GP+KNM+KQKALRVLKQKR+YE QR+ L+ Q
Sbjct: 26  SRSESIDKKISRLDAELVKYKDQMKKMREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQ 85

Query: 229 SFNLEQANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQASEI 408
           SFN+EQ N+AIQ++KDTK+ VDAMK+G K  KK +K +              M E A+EI
Sbjct: 86  SFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEI 145

Query: 409 QEVLGRTYDMPXXXXXXXXXXXXXXXXXIGIGEG-SYLDDALNVPGVPSTNPGESTVAPG 585
           QE L R+Y  P                 + + +  SYLD+A + P +P   P +S    G
Sbjct: 146 QEALSRSYGTPEIDEDDLEAELDALGDELLLDDDTSYLDEAASAPAIPEGVPNDSKNKDG 205

Query: 586 ELAVDEFGLPKIP 624
            L VDEFGLP+IP
Sbjct: 206 VL-VDEFGLPQIP 217
>sp|Q5RBR3|CHMP5_PONPY Charged multivesicular body protein 5 (Chromatin modifying protein
           5)
 sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 (Chromatin modifying protein
           5) (Vacuolar protein sorting 60) (Vps60) (hVps60) (SNF7
           domain-containing protein 2)
          Length = 219

 Score =  185 bits (469), Expect = 1e-46
 Identities = 99/193 (51%), Positives = 125/193 (64%), Gaps = 1/193 (0%)
 Frame = +1

Query: 49  SRGESVDKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQ 228
           SR ES+DKKI RLD EL KY++Q+KKMR+GPAKNM+KQKALRVLKQKR+YE QR+ L+ Q
Sbjct: 26  SRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQ 85

Query: 229 SFNLEQANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQASEI 408
           SFN+EQAN+ IQ++KDTK+ VDAMK+GVK  KK +K +              M E A+EI
Sbjct: 86  SFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEI 145

Query: 409 QEVLGRTYDMPXXXXXXXXXXXXXXXXXIGIGE-GSYLDDALNVPGVPSTNPGESTVAPG 585
           QE L R+Y  P                 +   E  SYLD+A + P +P   P ++    G
Sbjct: 146 QEALSRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDTKNKDG 205

Query: 586 ELAVDEFGLPKIP 624
            L VDEFGLP+IP
Sbjct: 206 VL-VDEFGLPQIP 217
>sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 (Chromatin modifying protein
           5)
          Length = 219

 Score =  184 bits (466), Expect = 3e-46
 Identities = 97/192 (50%), Positives = 124/192 (64%), Gaps = 1/192 (0%)
 Frame = +1

Query: 52  RGESVDKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQS 231
           R ES++KKI RLD EL KY++QMKKMR+GP+KNM+KQKALRVLKQKR+YE QR+ L+ QS
Sbjct: 27  RAESIEKKISRLDAELIKYKDQMKKMREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQS 86

Query: 232 FNLEQANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQASEIQ 411
           FN+EQAN+ IQT+KDTK+ VDAMK+G K  KK +K +              M E A+EIQ
Sbjct: 87  FNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQ 146

Query: 412 EVLGRTYDMPXXXXXXXXXXXXXXXXXIGIGEG-SYLDDALNVPGVPSTNPGESTVAPGE 588
           E L R+Y  P                 + + +  SYLD+A + P +P   P +S    G 
Sbjct: 147 EALSRSYGTPEIDEDDLEAELDALGDELLLDDDTSYLDEAASAPAIPEGVPNDSKNKDGV 206

Query: 589 LAVDEFGLPKIP 624
           L VDEFGLP+IP
Sbjct: 207 L-VDEFGLPQIP 217
>sp|Q03390|VPS60_YEAST Vacuolar protein sorting-associated protein VPS60
          Length = 262

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 29/126 (23%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
 Frame = +1

Query: 58  ESVDKKIQRLDVELAKYREQMKKM-----RDGPAKNMIKQKALRVLKQKRVYENQREQLS 222
           +S+  +I +LD ++A+   Q++ +     R    +  ++++AL++L +++  EN ++ L 
Sbjct: 62  QSLSNRISQLDTQIAQLNFQLQNIQKNLQRSNNKQPSLRKQALKILNKRKQLENMKDSLD 121

Query: 223 NQSFNLEQANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQAS 402
           +QS+++ QA      +++T   ++A+K    + K ++  +N             + EQ  
Sbjct: 122 SQSWSMTQAQLTNDNLQNTMITINALKQTNNAMKAQYGKINIDKLQDMQDEMLDLIEQGD 181

Query: 403 EIQEVL 420
           E+QEVL
Sbjct: 182 ELQEVL 187
>sp|Q6FW96|SNF7_CANGA Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
           protein VPS32)
          Length = 228

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 31/121 (25%), Positives = 50/121 (41%)
 Frame = +1

Query: 64  VDKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQSFNLE 243
           + KK   L  ++     + +K      K M K      LK+K+VYE Q  +L +Q  +LE
Sbjct: 31  LSKKQAHLQGQITAQENEARKFLTRGNKTMAKN----ALKKKKVYEGQLVKLESQMDSLE 86

Query: 244 QANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQASEIQEVLG 423
           Q  F+I++       + AMK G K+ K     ++               E   EI + + 
Sbjct: 87  QQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAIS 146

Query: 424 R 426
           R
Sbjct: 147 R 147
>sp|Q6CJL0|SNF7_KLULA Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
           protein VPS32)
          Length = 232

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 29/121 (23%), Positives = 54/121 (44%)
 Frame = +1

Query: 64  VDKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQSFNLE 243
           ++KK   L  ++ + ++  KK      KN  K      LK+K++YE+Q ++L +Q  +L+
Sbjct: 30  LNKKQAHLQTQIDQQQQLAKKSLQSGNKNNAKT----YLKKKKLYESQLDKLQSQIDSLD 85

Query: 244 QANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQASEIQEVLG 423
           Q  ++I+        + AMK G  + K   K ++               E   EI E + 
Sbjct: 86  QQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAIS 145

Query: 424 R 426
           +
Sbjct: 146 K 146
>sp|Q9P7F7|SNF7_SCHPO Vacuolar sorting protein snf7 (Vacuolar protein sorting-associated
           protein vps32)
          Length = 222

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 28/93 (30%), Positives = 49/93 (52%)
 Frame = +1

Query: 67  DKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQSFNLEQ 246
           DKK + L+ ++A   EQ +  R     N  K+ AL  LK+K+++EN+  ++     N+EQ
Sbjct: 32  DKKEEVLERQIA---EQTEIARKNATTN--KRLALTALKRKKMHENELVKIEGSRNNIEQ 86

Query: 247 ANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMN 345
             F+IQ        + AM+ G ++ K   + M+
Sbjct: 87  QLFSIQNANLNFETLQAMRQGAEAMKSIQRGMD 119
>sp|Q753W3|SNF7_ASHGO Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
           protein VPS32)
          Length = 237

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 29/121 (23%), Positives = 49/121 (40%)
 Frame = +1

Query: 64  VDKKIQRLDVELAKYREQMKKMRDGPAKNMIKQKALRVLKQKRVYENQREQLSNQSFNLE 243
           + KK   L  ++    E  +       KNM K      LK+K+V+E+Q  ++  Q  +LE
Sbjct: 32  LSKKQAHLQTQMTSQEESARHFLSKGNKNMAKA----ALKRKKVFESQLLKIDKQVDSLE 87

Query: 244 QANFAIQTVKDTKSQVDAMKIGVKSFKKEFKNMNXXXXXXXXXXXXXMTEQASEIQEVLG 423
           Q  ++I+        + AMK G  + K   + ++               E   EI E + 
Sbjct: 88  QQLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAIS 147

Query: 424 R 426
           R
Sbjct: 148 R 148
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,921,567
Number of Sequences: 369166
Number of extensions: 1358244
Number of successful extensions: 3964
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3928
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)