Planaria EST Database


DrC_01472

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01472
         (937 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03934|TC1A_CAEEL  Transposable element Tc1 transposase         82   2e-15
sp|Q04202|TCB2_CAEBR  Transposable element Tcb2 transposase        82   2e-15
sp|P35072|TCB1_CAEBR  Transposable element Tcb1 transposase ...    79   1e-14
sp|P34257|TC3A_CAEEL  Transposable element Tc3 transposase         52   3e-06
sp|Q96EP0|RNF31_HUMAN  RING finger protein 31 (Zinc in-betwe...    32   3.4  
sp|O69548|TOP1_MYCLE  DNA topoisomerase I (Omega-protein) (R...    30   7.5  
>sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase
          Length = 273

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
 Frame = -3

Query: 407 LDRSMSRAVRQDPFVSAVAFMRQISDITNC--SVYTVRRRLKEQGYKTYSPAHKTKLSER 234
           +DR++ R+ R+DP  +A      IS       S  TVRRRL++ G     P  K  +S++
Sbjct: 1   MDRNILRSAREDPHRTATDIQMIISSPNEPVPSKRTVRRRLQQAGLHGRKPVKKPFISKK 60

Query: 233 HKAMRLAWSEEYLNWTPAQWEQVVFSDESKF-LIEQHHVRYVRRKNGQRYNEDCIVPQAN 57
           ++  R+AW++ +L W   +W + ++SDESKF L       +VRR  G RY+     P   
Sbjct: 61  NRMARVAWAKAHLRWGRQEWAKHIWSDESKFNLFGSDGNSWVRRPVGSRYSPKYQCPTVK 120

Query: 56  RGIGSVMIWAAF 21
            G GSVM+W  F
Sbjct: 121 HGGGSVMVWGCF 132
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
          Length = 273

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 4/133 (3%)
 Frame = -3

Query: 407 LDRSMSRAVRQDPFVSAVAFMRQI---SDITNCSVYTVRRRLKEQGYKTYSPAHKTKLSE 237
           +DR++ R  R+DP  S+      +   +++T  S+ TVRRRL++ G     PA K  +S+
Sbjct: 1   MDRNIVRVSREDPQRSSTDIQMVVKTPNEVTP-SLRTVRRRLQDAGLHGRRPAKKPSISK 59

Query: 236 RHKAMRLAWSEEYLNWTPAQWEQVVFSDESKF-LIEQHHVRYVRRKNGQRYNEDCIVPQA 60
           +++  R+AW+  +L+W    W   VFSDESKF L     ++++RR  G R++    +   
Sbjct: 60  KNRIARVAWARAHLHWGRQDWANHVFSDESKFNLFGTDGIKWIRRPVGCRFDPSYQLQTV 119

Query: 59  NRGIGSVMIWAAF 21
             G GSVM+W  F
Sbjct: 120 KHGGGSVMVWGCF 132
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase (Transposable element Barney
           transposase)
          Length = 273

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
 Frame = -3

Query: 407 LDRSMSRAVRQDPFVSAVAFMRQISDITNC--SVYTVRRRLKEQGYKTYSPAHKTKLSER 234
           +DR++ RA R+DP  ++      ++       S  T+RRRL+  G     P  K  +S +
Sbjct: 1   MDRNILRACREDPRRTSTDIQLSVTSPNEPVPSRRTIRRRLQVAGLHGRRPVKKPLVSLK 60

Query: 233 HKAMRLAWSEEYLNWTPAQWEQVVFSDESKF-LIEQHHVRYVRRKNGQRYNEDCIVPQAN 57
           ++  R+ W++++L+W P +W   ++SDESKF +     ++++RR  G RY      P   
Sbjct: 61  NRKARVEWAKQHLSWGpreWANHIWSDESKFNMFGTDGIQWIRRPIGSRYAPQYQCPTVK 120

Query: 56  RGIGSVMIWAAF 21
            G GSVM+W  F
Sbjct: 121 HGGGSVMVWGCF 132
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
          Length = 329

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
 Frame = -3

Query: 629 MSRGSDLFDFVRGQMYALKFYANWSVKQISNAVGVNYGCAKKYCQRA*VKRNLNLSAATD 450
           M RGS L D  R Q+  +K   N S+ ++S  +  +  C ++Y +         +S  T 
Sbjct: 1   MPRGSALSDTERAQLDVMKLL-NVSLHEMSRKISRSRHCIREYLKDP-------VSYGTS 52

Query: 449 RKGKCDRERCTSERLDRSMSRA----------VRQDPFVSAVAFMRQISDITNCSVYTVR 300
           ++    R +  S R +R++ RA          +R +  +SA    R I ++   S   VR
Sbjct: 53  KRAP--RRKALSVRDERNVIRAASNSCKTARDIRNELQLSASK--RTILNVIKRSGVIVR 108

Query: 299 RRLKEQGYKTYSPAHKTKLSERHKAMRLAWSEEYLNWTPAQWEQVVFSDESKFLIE-QHH 123
           ++L+        PA    LS  HK  RL +++  +      W +VVFSDE KF ++    
Sbjct: 109 QKLR--------PA--PLLSADHKLKRLEFAKNNMG---TNWSKVVFSDEKKFNLDGPDG 155

Query: 122 VRYVRRKNGQRYNEDCIVPQANRGIGSVMIWAAF 21
            RY  R       E  +  + N G G+VM+W AF
Sbjct: 156 CRYYWR---DLRKEPMVFSRRNFGGGTVMVWGAF 186
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
           ubiquitin-associated domain protein)
          Length = 1072

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 167 PAPIVQVSSLGI---PLTKLNALLCGAQKVLFYEQGCKFCSLAPLIVDVLC 310
           P+ +V     GI   PL + +ALL  AQ  ++Y   C FC+ +P  V V+C
Sbjct: 382 PSLVVDSRDAGICLQPLQQGDALLASAQSQVWYCIHCTFCNSSPGWVCVMC 432
>sp|O69548|TOP1_MYCLE DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
           enzyme) (Swivelase)
          Length = 947

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
 Frame = -3

Query: 308 TVRRRLKEQGYKTYSPAHKTKLSE------RHKAMRLAWSEEYLNWTPAQWEQVV 162
           ++ +RL E GY TY     T LSE      R +A +L + EEY++ +P Q+ + V
Sbjct: 330 SIAQRLYENGYITYMRTDSTTLSESAINAARTQARQL-YGEEYVSDSPRQYTRKV 383
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,286,344
Number of Sequences: 369166
Number of extensions: 1996183
Number of successful extensions: 4307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4301
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)