Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K17
(937 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase 82 2e-15
sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase 82 2e-15
sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase ... 79 1e-14
sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase 52 3e-06
sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-betwe... 32 3.4
sp|O69548|TOP1_MYCLE DNA topoisomerase I (Omega-protein) (R... 30 7.5
>sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase
Length = 273
Score = 82.0 bits (201), Expect = 2e-15
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Frame = -3
Query: 407 LDRSMSRAVRQDPFVSAVAFMRQISDITNC--SVYTVRRRLKEQGYKTYSPAHKTKLSER 234
+DR++ R+ R+DP +A IS S TVRRRL++ G P K +S++
Sbjct: 1 MDRNILRSAREDPHRTATDIQMIISSPNEPVPSKRTVRRRLQQAGLHGRKPVKKPFISKK 60
Query: 233 HKAMRLAWSEEYLNWTPAQWEQVVFSDESKF-LIEQHHVRYVRRKNGQRYNEDCIVPQAN 57
++ R+AW++ +L W +W + ++SDESKF L +VRR G RY+ P
Sbjct: 61 NRMARVAWAKAHLRWGRQEWAKHIWSDESKFNLFGSDGNSWVRRPVGSRYSPKYQCPTVK 120
Query: 56 RGIGSVMIWAAF 21
G GSVM+W F
Sbjct: 121 HGGGSVMVWGCF 132
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
Length = 273
Score = 82.0 bits (201), Expect = 2e-15
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 4/133 (3%)
Frame = -3
Query: 407 LDRSMSRAVRQDPFVSAVAFMRQI---SDITNCSVYTVRRRLKEQGYKTYSPAHKTKLSE 237
+DR++ R R+DP S+ + +++T S+ TVRRRL++ G PA K +S+
Sbjct: 1 MDRNIVRVSREDPQRSSTDIQMVVKTPNEVTP-SLRTVRRRLQDAGLHGRRPAKKPSISK 59
Query: 236 RHKAMRLAWSEEYLNWTPAQWEQVVFSDESKF-LIEQHHVRYVRRKNGQRYNEDCIVPQA 60
+++ R+AW+ +L+W W VFSDESKF L ++++RR G R++ +
Sbjct: 60 KNRIARVAWARAHLHWGRQDWANHVFSDESKFNLFGTDGIKWIRRPVGCRFDPSYQLQTV 119
Query: 59 NRGIGSVMIWAAF 21
G GSVM+W F
Sbjct: 120 KHGGGSVMVWGCF 132
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase (Transposable element Barney
transposase)
Length = 273
Score = 79.3 bits (194), Expect = 1e-14
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Frame = -3
Query: 407 LDRSMSRAVRQDPFVSAVAFMRQISDITNC--SVYTVRRRLKEQGYKTYSPAHKTKLSER 234
+DR++ RA R+DP ++ ++ S T+RRRL+ G P K +S +
Sbjct: 1 MDRNILRACREDPRRTSTDIQLSVTSPNEPVPSRRTIRRRLQVAGLHGRRPVKKPLVSLK 60
Query: 233 HKAMRLAWSEEYLNWTPAQWEQVVFSDESKF-LIEQHHVRYVRRKNGQRYNEDCIVPQAN 57
++ R+ W++++L+W P +W ++SDESKF + ++++RR G RY P
Sbjct: 61 NRKARVEWAKQHLSWGpreWANHIWSDESKFNMFGTDGIQWIRRPIGSRYAPQYQCPTVK 120
Query: 56 RGIGSVMIWAAF 21
G GSVM+W F
Sbjct: 121 HGGGSVMVWGCF 132
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
Length = 329
Score = 51.6 bits (122), Expect = 3e-06
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Frame = -3
Query: 629 MSRGSDLFDFVRGQMYALKFYANWSVKQISNAVGVNYGCAKKYCQRA*VKRNLNLSAATD 450
M RGS L D R Q+ +K N S+ ++S + + C ++Y + +S T
Sbjct: 1 MPRGSALSDTERAQLDVMKLL-NVSLHEMSRKISRSRHCIREYLKDP-------VSYGTS 52
Query: 449 RKGKCDRERCTSERLDRSMSRA----------VRQDPFVSAVAFMRQISDITNCSVYTVR 300
++ R + S R +R++ RA +R + +SA R I ++ S VR
Sbjct: 53 KRAP--RRKALSVRDERNVIRAASNSCKTARDIRNELQLSASK--RTILNVIKRSGVIVR 108
Query: 299 RRLKEQGYKTYSPAHKTKLSERHKAMRLAWSEEYLNWTPAQWEQVVFSDESKFLIE-QHH 123
++L+ PA LS HK RL +++ + W +VVFSDE KF ++
Sbjct: 109 QKLR--------PA--PLLSADHKLKRLEFAKNNMG---TNWSKVVFSDEKKFNLDGPDG 155
Query: 122 VRYVRRKNGQRYNEDCIVPQANRGIGSVMIWAAF 21
RY R E + + N G G+VM+W AF
Sbjct: 156 CRYYWR---DLRKEPMVFSRRNFGGGTVMVWGAF 186
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
ubiquitin-associated domain protein)
Length = 1072
Score = 31.6 bits (70), Expect = 3.4
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 167 PAPIVQVSSLGI---PLTKLNALLCGAQKVLFYEQGCKFCSLAPLIVDVLC 310
P+ +V GI PL + +ALL AQ ++Y C FC+ +P V V+C
Sbjct: 382 PSLVVDSRDAGICLQPLQQGDALLASAQSQVWYCIHCTFCNSSPGWVCVMC 432
>sp|O69548|TOP1_MYCLE DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 947
Score = 30.4 bits (67), Expect = 7.5
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = -3
Query: 308 TVRRRLKEQGYKTYSPAHKTKLSE------RHKAMRLAWSEEYLNWTPAQWEQVV 162
++ +RL E GY TY T LSE R +A +L + EEY++ +P Q+ + V
Sbjct: 330 SIAQRLYENGYITYMRTDSTTLSESAINAARTQARQL-YGEEYVSDSPRQYTRKV 383
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,286,344
Number of Sequences: 369166
Number of extensions: 1996183
Number of successful extensions: 4307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4301
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)