Planaria EST Database


DrC_01468

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01468
         (594 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q51342|PUR1_PSEAE  Amidophosphoribosyltransferase (Glutam...    30   6.0  
sp|Q47162|FCT_ERWCH  Ferrichrysobactin receptor precursor          29   7.8  
sp|Q9Z1N9|UN13B_MOUSE  Unc-13 homolog B (Munc13-2) (munc13)        29   7.8  
sp|O27442|CSD_METTH  Probable cysteine desulfurase                 29   7.8  
>sp|Q51342|PUR1_PSEAE Amidophosphoribosyltransferase (Glutamine
           phosphoribosylpyrophosphate amidotransferase) (ATase)
           (GPATase)
          Length = 501

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = +3

Query: 345 YTIEFMDKHELSHSDRYTSDKESESGIEWITIEEL---------HMLKSNEFDVSCYSSP 497
           Y I+    HEL   +R T D     G +W+  ++L           +K + FD + +   
Sbjct: 404 YGIDMPSAHELIAHNRSTEDVSKLIGADWLVYQDLPDLIDAVGGGKIKIDHFDCAVFDGE 463

Query: 498 TNSYSTSEYSLNEIE 542
             +   +E  LN IE
Sbjct: 464 YVTGDVNEAYLNRIE 478
>sp|Q47162|FCT_ERWCH Ferrichrysobactin receptor precursor
          Length = 735

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 426 EWITIEELHMLKSNEFDVSCYSSPTNSYSTSEYSLNEIEWIEENQLDQL 572
           +W+T+E+   L  N      +++PT + S ++  L E+   E N+L+Q+
Sbjct: 402 KWLTLEKKMWLDRNNDYSFNWANPTYNVSVNDSMLTELSTNERNKLNQV 450
>sp|Q9Z1N9|UN13B_MOUSE Unc-13 homolog B (Munc13-2) (munc13)
          Length = 1591

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 408 PYHSCTDQNDSIHVYP-*IQWYNQMMKYPLQETFHEDAN 295
           PYH+ T  N S+H +P  ++W  Q+    LQ + H+  N
Sbjct: 202 PYHTTTQPNASVHQFPVPVRWPQQLF---LQGSSHDSCN 237
>sp|O27442|CSD_METTH Probable cysteine desulfurase
          Length = 400

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 441 EELHMLKSNEFDVSCYSSPTNSYSTSEYSLNEIE 542
           EELH   S+   + CY  P N Y    +++N ++
Sbjct: 301 EELHATVSSIDGIECYGDPQNIYGILSFNINNMD 334
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,201,365
Number of Sequences: 369166
Number of extensions: 928149
Number of successful extensions: 2270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2270
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)