Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K09
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q51342|PUR1_PSEAE Amidophosphoribosyltransferase (Glutam... 30 6.0
sp|Q47162|FCT_ERWCH Ferrichrysobactin receptor precursor 29 7.8
sp|Q9Z1N9|UN13B_MOUSE Unc-13 homolog B (Munc13-2) (munc13) 29 7.8
sp|O27442|CSD_METTH Probable cysteine desulfurase 29 7.8
>sp|Q51342|PUR1_PSEAE Amidophosphoribosyltransferase (Glutamine
phosphoribosylpyrophosphate amidotransferase) (ATase)
(GPATase)
Length = 501
Score = 29.6 bits (65), Expect = 6.0
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Frame = +3
Query: 345 YTIEFMDKHELSHSDRYTSDKESESGIEWITIEEL---------HMLKSNEFDVSCYSSP 497
Y I+ HEL +R T D G +W+ ++L +K + FD + +
Sbjct: 404 YGIDMPSAHELIAHNRSTEDVSKLIGADWLVYQDLPDLIDAVGGGKIKIDHFDCAVFDGE 463
Query: 498 TNSYSTSEYSLNEIE 542
+ +E LN IE
Sbjct: 464 YVTGDVNEAYLNRIE 478
>sp|Q47162|FCT_ERWCH Ferrichrysobactin receptor precursor
Length = 735
Score = 29.3 bits (64), Expect = 7.8
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 426 EWITIEELHMLKSNEFDVSCYSSPTNSYSTSEYSLNEIEWIEENQLDQL 572
+W+T+E+ L N +++PT + S ++ L E+ E N+L+Q+
Sbjct: 402 KWLTLEKKMWLDRNNDYSFNWANPTYNVSVNDSMLTELSTNERNKLNQV 450
>sp|Q9Z1N9|UN13B_MOUSE Unc-13 homolog B (Munc13-2) (munc13)
Length = 1591
Score = 29.3 bits (64), Expect = 7.8
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 408 PYHSCTDQNDSIHVYP-*IQWYNQMMKYPLQETFHEDAN 295
PYH+ T N S+H +P ++W Q+ LQ + H+ N
Sbjct: 202 PYHTTTQPNASVHQFPVPVRWPQQLF---LQGSSHDSCN 237
>sp|O27442|CSD_METTH Probable cysteine desulfurase
Length = 400
Score = 29.3 bits (64), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 441 EELHMLKSNEFDVSCYSSPTNSYSTSEYSLNEIE 542
EELH S+ + CY P N Y +++N ++
Sbjct: 301 EELHATVSSIDGIECYGDPQNIYGILSFNINNMD 334
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,201,365
Number of Sequences: 369166
Number of extensions: 928149
Number of successful extensions: 2270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2270
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)