Planaria EST Database


DrC_01467

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01467
         (840 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99PA3|BASI_CRIGR  Basigin (CD147 antigen)                      34   0.57 
sp|P26453|BASI_RAT  Basigin precursor (CD147 antigen) (OX-47...    32   2.2  
sp|P17790|BASI_CHICK  Basigin precursor (Blood-brain barrier...    31   4.9  
sp|P18572|BASI_MOUSE  Basigin precursor (CD147 antigen) (Bas...    30   6.4  
>sp|Q99PA3|BASI_CRIGR Basigin (CD147 antigen)
          Length = 249

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +3

Query: 18  IMQLRVKDRLAPLWPFXXXXXXXXXXXXXXXFYERKKSNTKTEEIEQNPTRQSLLADTKS 197
           IM LRV+ RLA LWPF                YE+++   +T + E +P    L      
Sbjct: 177 IMTLRVRSRLAALWPFLGIVAEVLVLVTIIFIYEKRRKPDQTLD-EDDPGAAPLKGSGHH 235

Query: 198 SELNEGGIRHRN 233
               +  +R RN
Sbjct: 236 MNDKDKNVRQRN 247
>sp|P26453|BASI_RAT Basigin precursor (CD147 antigen) (OX-47 antigen) (Glycoprotein
           CE9)
          Length = 388

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 23/77 (29%), Positives = 32/77 (41%)
 Frame = +3

Query: 3   SARGVIMQLRVKDRLAPLWPFXXXXXXXXXXXXXXXFYERKKSNTKTEEIEQNPTRQSLL 182
           SAR  I  LRV+ RLA LWPF                YE+++   +T + E +P    L 
Sbjct: 312 SARETI-SLRVRSRLAALWPFLGIVAEVLVLVTIIFIYEKRRKPDQTLD-EDDPGAAPLK 369

Query: 183 ADTKSSELNEGGIRHRN 233
                    +  +R RN
Sbjct: 370 GSGSHLNDKDKNVRQRN 386
>sp|P17790|BASI_CHICK Basigin precursor (Blood-brain barrier HT7 antigen) (Neurothelin)
           (5A11 antigen)
          Length = 388

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +3

Query: 21  MQLRVKDRLAPLWPFXXXXXXXXXXXXXXXFYERKKSNTKTEEIEQNPTRQSLLADTKSS 200
           + LRV+ RLA LWPF                YE+++   K +E+  +    S    + ++
Sbjct: 319 VNLRVRSRLAALWPFLGIVAEVLVLVTIIFIYEKRR---KPDEVLDDDDGGSAPLKSNAT 375

Query: 201 ELNEGGIRHRN 233
              +  +R RN
Sbjct: 376 NHKDKNVRQRN 386
>sp|P18572|BASI_MOUSE Basigin precursor (CD147 antigen) (Basic immunoglobulin
           superfamily) (Membrane glycoprotein gp42) (HT7 antigen)
          Length = 389

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +3

Query: 21  MQLRVKDRLAPLWPFXXXXXXXXXXXXXXXFYERKKSNTKTEEIEQNPTRQSLLADTKSS 200
           + LRV+ R+A LWPF                YE+++   +T + E +P    L       
Sbjct: 318 ISLRVRSRMAALWPFLGIVAEVLVLVTIIFIYEKRRKPDQTLD-EDDPGAAPLKGSGTHM 376

Query: 201 ELNEGGIRHRN 233
              +  +R RN
Sbjct: 377 NDKDKNVRQRN 387
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,867,475
Number of Sequences: 369166
Number of extensions: 840150
Number of successful extensions: 1667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)