Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K07
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99PA3|BASI_CRIGR Basigin (CD147 antigen) 34 0.57
sp|P26453|BASI_RAT Basigin precursor (CD147 antigen) (OX-47... 32 2.2
sp|P17790|BASI_CHICK Basigin precursor (Blood-brain barrier... 31 4.9
sp|P18572|BASI_MOUSE Basigin precursor (CD147 antigen) (Bas... 30 6.4
>sp|Q99PA3|BASI_CRIGR Basigin (CD147 antigen)
Length = 249
Score = 33.9 bits (76), Expect = 0.57
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +3
Query: 18 IMQLRVKDRLAPLWPFXXXXXXXXXXXXXXXFYERKKSNTKTEEIEQNPTRQSLLADTKS 197
IM LRV+ RLA LWPF YE+++ +T + E +P L
Sbjct: 177 IMTLRVRSRLAALWPFLGIVAEVLVLVTIIFIYEKRRKPDQTLD-EDDPGAAPLKGSGHH 235
Query: 198 SELNEGGIRHRN 233
+ +R RN
Sbjct: 236 MNDKDKNVRQRN 247
>sp|P26453|BASI_RAT Basigin precursor (CD147 antigen) (OX-47 antigen) (Glycoprotein
CE9)
Length = 388
Score = 32.0 bits (71), Expect = 2.2
Identities = 23/77 (29%), Positives = 32/77 (41%)
Frame = +3
Query: 3 SARGVIMQLRVKDRLAPLWPFXXXXXXXXXXXXXXXFYERKKSNTKTEEIEQNPTRQSLL 182
SAR I LRV+ RLA LWPF YE+++ +T + E +P L
Sbjct: 312 SARETI-SLRVRSRLAALWPFLGIVAEVLVLVTIIFIYEKRRKPDQTLD-EDDPGAAPLK 369
Query: 183 ADTKSSELNEGGIRHRN 233
+ +R RN
Sbjct: 370 GSGSHLNDKDKNVRQRN 386
>sp|P17790|BASI_CHICK Basigin precursor (Blood-brain barrier HT7 antigen) (Neurothelin)
(5A11 antigen)
Length = 388
Score = 30.8 bits (68), Expect = 4.9
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 21 MQLRVKDRLAPLWPFXXXXXXXXXXXXXXXFYERKKSNTKTEEIEQNPTRQSLLADTKSS 200
+ LRV+ RLA LWPF YE+++ K +E+ + S + ++
Sbjct: 319 VNLRVRSRLAALWPFLGIVAEVLVLVTIIFIYEKRR---KPDEVLDDDDGGSAPLKSNAT 375
Query: 201 ELNEGGIRHRN 233
+ +R RN
Sbjct: 376 NHKDKNVRQRN 386
>sp|P18572|BASI_MOUSE Basigin precursor (CD147 antigen) (Basic immunoglobulin
superfamily) (Membrane glycoprotein gp42) (HT7 antigen)
Length = 389
Score = 30.4 bits (67), Expect = 6.4
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +3
Query: 21 MQLRVKDRLAPLWPFXXXXXXXXXXXXXXXFYERKKSNTKTEEIEQNPTRQSLLADTKSS 200
+ LRV+ R+A LWPF YE+++ +T + E +P L
Sbjct: 318 ISLRVRSRMAALWPFLGIVAEVLVLVTIIFIYEKRRKPDQTLD-EDDPGAAPLKGSGTHM 376
Query: 201 ELNEGGIRHRN 233
+ +R RN
Sbjct: 377 NDKDKNVRQRN 387
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,867,475
Number of Sequences: 369166
Number of extensions: 840150
Number of successful extensions: 1667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)