Planaria EST Database


DrC_01465

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01465
         (1010 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96I24|FUBP3_HUMAN  Far upstream element-binding protein ...    78   3e-14
sp|Q99PF5|FUBP2_RAT  Far upstream element-binding protein 2 ...    77   1e-13
sp|Q91WJ8|FUBP1_MOUSE  Far upstream element-binding protein ...    75   3e-13
sp|Q96AE4|FUBP1_HUMAN  Far upstream element-binding protein ...    75   3e-13
sp|Q92945|FUBP2_HUMAN  Far upstream element-binding protein ...    74   5e-13
sp|Q8UVD9|ZBP2_CHICK  Zipcode-binding protein 2                    74   7e-13
sp|Q9UNW9|NOVA2_HUMAN  RNA-binding protein Nova-2 (Neuro-onc...    45   3e-04
sp|Q9Y2W6|TDRKH_HUMAN  Tudor and KH domain-containing protein      44   0.001
sp|Q80VL1|TDRKH_MOUSE  Tudor and KH domain-containing protein      44   0.001
sp|Q9JKN6|NOVA1_MOUSE  RNA-binding protein Nova-1 (Neuro-onc...    42   0.002
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
          Length = 572

 Score = 78.2 bits (191), Expect = 3e-14
 Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 30/177 (16%)
 Frame = +1

Query: 67  PENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRGQ 240
           P       Y VP +K GLVIGKGGE I+ I  +SGA VE+ +     +DP ++ F +RG 
Sbjct: 351 PGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGV 410

Query: 241 RHEIDNAIRFISERAG----------------IPVGPPH--SYYPNXXXXXXXXXXXXXX 366
             +I+ A + I E+ G                 P  PPH  ++ P               
Sbjct: 411 PQQIEVARQLIDEKVGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPRSSGCFPNMAAKVNG 470

Query: 367 XXXXPAAAGSQQGWTQGAASA----------MPAPTINPQTGQPDYSAAWAEYYRRQ 507
                  +G     TQG  S           +P+    PQ+ QP+YS AW +YY++Q
Sbjct: 471 NPHSTPVSGPPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQPNYSKAWEDYYKKQ 527

 Score = 37.7 bits (86), Expect = 0.052
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 73  NADLCVYAVPTEKAGLVIGKGGETIREICGRSGA-FVEISKQQTADPAIKLFNVRGQRHE 249
           N+ +    +P  K GLVIG+GGETI+++  R+G   V I        A K   + G   +
Sbjct: 161 NSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFK 220

Query: 250 IDNAIRFISE 279
           +  A   + E
Sbjct: 221 VQQAREMVLE 230

 Score = 34.3 bits (77), Expect = 0.58
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 91  YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADP 210
           + VP +  G +IG+GGE I  I   SG  ++I+ + +  P
Sbjct: 82  FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP 121
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
            type splicing regulatory protein) (KSRP) (MAP2 RNA
            trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 76.6 bits (187), Expect = 1e-13
 Identities = 61/202 (30%), Positives = 79/202 (39%), Gaps = 62/202 (30%)
 Frame = +1

Query: 91   YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRGQRHEIDNAI 264
            +++PT K GLVIG+GGE ++ I  ++GAFVEIS+Q     DP  KLF +RG   +ID+A 
Sbjct: 430  FSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAK 489

Query: 265  RFISERAG---IPVG----------------------------------PPHSYYPNXXX 333
            + I E+      PVG                                  PPH Y P    
Sbjct: 490  QLIEEKIEGPLCPVGPGPGGPGPAGPMGPFHPGPFNQGPPGAPPHAGGPPPHQYPPQGWG 549

Query: 334  XXXXXXXXXXXXXXXPAAAGSQQ-----------------GWTQGAASAMPAPTIN---- 450
                            AAA +                   G   G A A  AP       
Sbjct: 550  NTYPEWQPPAPHDPNKAAAAATDPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPP 609

Query: 451  --PQTGQPDYSAAWAEYYRRQG 510
              P TGQ DY+ AW EYY++ G
Sbjct: 610  QPPPTGQSDYTKAWEEYYKKIG 631

 Score = 38.5 bits (88), Expect = 0.031
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 70  ENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI-KLFNVRGQRH 246
           +N  +    +P  KAGLVIGKGGETI+++  R+G  + + +  + +  + K   + G  +
Sbjct: 232 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPY 291

Query: 247 EIDNAIRFISE 279
           ++  A   + +
Sbjct: 292 KVQQACEMVMD 302

 Score = 38.1 bits (87), Expect = 0.040
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 451 PQTGQPDYSAAWAEYYRRQGMH 516
           P   QPDYSAAWAEYYR+Q  +
Sbjct: 668 PPGSQPDYSAAWAEYYRQQAAY 689

 Score = 37.0 bits (84), Expect = 0.089
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 64  PPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAIKLFNVRGQR 243
           PP  +    Y VP    GL+IG+GGE I +I   SG  V+IS      P  +  ++ G  
Sbjct: 141 PPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE-RSVSLTGAP 199

Query: 244 HEIDNAIRFISERAGI-PVGPPHSYYPN 324
             +  A   + +       GPP  ++ N
Sbjct: 200 ESVQKAKMMLDDIVSRGRGGPPGQFHDN 227
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 (FUSE-binding protein 1)
           (FBP)
          Length = 651

 Score = 75.1 bits (183), Expect = 3e-13
 Identities = 57/170 (33%), Positives = 72/170 (42%), Gaps = 25/170 (14%)
 Frame = +1

Query: 64  PPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEI--SKQQTADPAIKLFNVRG 237
           PP       + VPT K GL+IGKGGETI+ I  +SGA +E+  S    ADP +KLF +RG
Sbjct: 368 PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRG 427

Query: 238 QRHEIDNAIRFISERAGIPV---GPPHSYYPN-------------------XXXXXXXXX 351
              +ID A + I E+ G PV   GPP  + P+                            
Sbjct: 428 TPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNP 487

Query: 352 XXXXXXXXXPAAAGSQQGWTQGAAS-AMPAPTINPQTGQPDYSAAWAEYY 498
                    P A  + QGW          AP    + G    SAAWA YY
Sbjct: 488 GPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGADPNSAAWAAYY 537

 Score = 47.4 bits (111), Expect = 7e-05
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = +1

Query: 379 PAAAGS---QQGWTQ---GAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 516
           PA AG     + W +       A+PAP   P  GQPDYSAAWAEYYR+Q  +
Sbjct: 570 PAPAGQVDYTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAY 621

 Score = 40.4 bits (93), Expect = 0.008
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 97  VPTEKAGLVIGKGGETIREICGRSGA-FVEISKQQTADPAIKLFNVRGQRHEIDNAIRFI 273
           +P  KAGLVIGKGGETI+++  R+G   V I        A K   + G  +++  A   +
Sbjct: 188 IPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV 247

Query: 274 SE 279
            E
Sbjct: 248 LE 249

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 91  YAVPTEKAGLVIGKGGETIREICGRSGAFVEIS 189
           Y VP    G +IG+GGE I  I   SG  ++I+
Sbjct: 101 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIA 133

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +1

Query: 97  VPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAIKLFNVRGQRHEIDNAIRFIS 276
           +P    G+VIG+ GE I++I   +G  ++        P  ++  + G      +A   I+
Sbjct: 278 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPD-RIAQITGPPDRCQHAAEIIT 336

Query: 277 E-----RAGIPVGP 303
           +     +AG P GP
Sbjct: 337 DLLRSVQAGNPGGP 350
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 (FUSE-binding protein 1)
           (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 75.1 bits (183), Expect = 3e-13
 Identities = 56/170 (32%), Positives = 72/170 (42%), Gaps = 25/170 (14%)
 Frame = +1

Query: 64  PPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRG 237
           PP       + VPT K GL+IGKGGETI+ I  +SGA +E+ +     ADP +KLF +RG
Sbjct: 371 PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG 430

Query: 238 QRHEIDNAIRFISERAGIPV---GPPHSYYPN-------------------XXXXXXXXX 351
              +ID A + I E+ G PV   GPP  + P+                            
Sbjct: 431 TPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNP 490

Query: 352 XXXXXXXXXPAAAGSQQGWTQGAAS-AMPAPTINPQTGQPDYSAAWAEYY 498
                    P A  + QGW          AP    + G    SAAWA YY
Sbjct: 491 GPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGTDPNSAAWAAYY 540

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
 Frame = +1

Query: 379 PAAAGS---QQGWTQ---GAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 516
           PA AG     + W +       A+PAPT  P  GQPDYSAAWAEYYR+Q  +
Sbjct: 573 PAPAGQVDYTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAY 624

 Score = 40.4 bits (93), Expect = 0.008
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 97  VPTEKAGLVIGKGGETIREICGRSGA-FVEISKQQTADPAIKLFNVRGQRHEIDNAIRFI 273
           +P  KAGLVIGKGGETI+++  R+G   V I        A K   + G  +++  A   +
Sbjct: 191 IPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV 250

Query: 274 SE 279
            E
Sbjct: 251 LE 252

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 91  YAVPTEKAGLVIGKGGETIREICGRSGAFVEIS 189
           Y VP    G +IG+GGE I  I   SG  ++I+
Sbjct: 104 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIA 136

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +1

Query: 97  VPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAIKLFNVRGQRHEIDNAIRFIS 276
           +P    G+VIG+ GE I++I   +G  ++        P  ++  + G      +A   I+
Sbjct: 281 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPE-RIAQITGPPDRCQHAAEIIT 339

Query: 277 E-----RAGIPVGP 303
           +     +AG P GP
Sbjct: 340 DLLRSVQAGNPGGP 353
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
            type splicing regulatory protein) (KSRP) (p75)
          Length = 707

 Score = 74.3 bits (181), Expect = 5e-13
 Identities = 60/202 (29%), Positives = 78/202 (38%), Gaps = 62/202 (30%)
 Frame = +1

Query: 91   YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRGQRHEIDNAI 264
            +++PT K GLVIG+GGE ++ I  ++GAFVEIS+Q   T  P  KLF +RG   +ID+  
Sbjct: 427  FSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPTGTPTSKLFIIRGSPQQIDHCR 486

Query: 265  RFISERAG---IPVG----------------------------------PPHSYYPNXXX 333
            + I E+      PVG                                  PPH Y P    
Sbjct: 487  QLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWG 546

Query: 334  XXXXXXXXXXXXXXXPAAAGSQQ-----------------GWTQGAASAMPAPTIN---- 450
                            AAA +                   G   G A A  AP       
Sbjct: 547  NTYPQWQPPAPHDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPP 606

Query: 451  --PQTGQPDYSAAWAEYYRRQG 510
              P TGQ DY+ AW EYY++ G
Sbjct: 607  QPPPTGQSDYTKAWEEYYKKIG 628

 Score = 38.5 bits (88), Expect = 0.031
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 70  ENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI-KLFNVRGQRH 246
           +N  +    +P  KAGLVIGKGGETI+++  R+G  + + +  + +  + K   + G  +
Sbjct: 231 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPY 290

Query: 247 EIDNAIRFISE 279
           ++  A   + +
Sbjct: 291 KVQQACEMVMD 301

 Score = 38.1 bits (87), Expect = 0.040
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 451 PQTGQPDYSAAWAEYYRRQGMH 516
           P   QPDYSAAWAEYYR+Q  +
Sbjct: 665 PPGSQPDYSAAWAEYYRQQAAY 686

 Score = 37.0 bits (84), Expect = 0.089
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 64  PPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAIKLFNVRGQR 243
           PP  +    Y VP    GL+IG+GGE I +I   SG  V+IS      P  +  ++ G  
Sbjct: 140 PPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE-RSVSLTGAP 198

Query: 244 HEIDNAIRFISERAGI-PVGPPHSYYPN 324
             +  A   + +       GPP  ++ N
Sbjct: 199 ESVQKAKMMLDDIVSRGRGGPPGQFHDN 226
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2
          Length = 769

 Score = 73.9 bits (180), Expect = 7e-13
 Identities = 59/198 (29%), Positives = 78/198 (39%), Gaps = 58/198 (29%)
 Frame = +1

Query: 91   YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRGQRHEIDNAI 264
            +++PT K GLVIG+GGE ++ I  + GAFVEIS+Q     DP  KLF +RG   +I++A 
Sbjct: 491  FSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAK 550

Query: 265  RFISERAG---IPVG-------------------------------PPHSYYPNXXXXXX 342
            + I E+      PVG                               PPH Y P       
Sbjct: 551  QPIEEKIEGPLCPVGPGPGPGGPPGPAGPMGPFNPGPFNQGPPGGPPPHQYPPQGWGNTY 610

Query: 343  XXXXXXXXXXXXPAAAGSQ----------------QGWTQGAASAMPAPTIN------PQ 456
                         AAA +                  G   G   A  AP +       P 
Sbjct: 611  PQWQPPAPHDPSKAAAAADPNAAWAGYYSHYYQQPPGPVPGQPPAPTAPPVQGEPPQPPP 670

Query: 457  TGQPDYSAAWAEYYRRQG 510
            TGQ DY+ AW EYY++ G
Sbjct: 671  TGQSDYTKAWEEYYKKIG 688

 Score = 39.7 bits (91), Expect = 0.014
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +1

Query: 70  ENADLCVYAVPTEKAGLVIGKGGETIREICGRSGA---FVEISKQQTADPAIKLFNVRGQ 240
           +N  +    +P  KAGLVIGKGGETI+++  R+G    F++   Q T     K   + G 
Sbjct: 294 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNT--NVDKPLRIIGD 351

Query: 241 RHEIDNAIRFISE 279
            +++  A   + +
Sbjct: 352 PYKVQQACEMVMD 364

 Score = 38.9 bits (89), Expect = 0.023
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = +1

Query: 409 TQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 516
           T G   A P P       QPDYSAAWAEYYR+Q  +
Sbjct: 719 TGGGPGAPPGP-------QPDYSAAWAEYYRQQAAY 747

 Score = 37.0 bits (84), Expect = 0.089
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
 Frame = +1

Query: 43  PKLTFAQPPENADLCV--YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI 216
           P+L    PP  +      Y VP    GL+IG+GGE I +I   SG  V+IS      P  
Sbjct: 195 PQLGPMHPPPRSTTVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE- 253

Query: 217 KLFNVRGQRHEIDNA----IRFISERAGIPVGPPHSY 315
           +  ++ G    +  A       +S   G P G  H Y
Sbjct: 254 RSVSLTGSPEAVQKAKLMLDDIVSRGRGGPPGQFHDY 290
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 (Neuro-oncological ventral antigen 2)
           (Astrocytic NOVA1-like RNA-binding protein)
          Length = 492

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +1

Query: 67  PENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEIS-KQQTADPAIKLFNVRGQR 243
           P+ A      VP   AGL+IGKGG T++ +  +SGA+V++S K +  +   ++  V G+ 
Sbjct: 127 PDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEP 186

Query: 244 HEIDNAIRFISER 282
            ++  A+  I ++
Sbjct: 187 EQVHKAVSAIVQK 199

 Score = 37.7 bits (86), Expect = 0.052
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = +1

Query: 97  VPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI--KLFNVRGQRHEIDNAIRF 270
           +P+  AG +IGKGG+TI ++   +GA +++SK +   P    ++  V+G    ++    F
Sbjct: 39  IPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSF 98

Query: 271 ISER 282
           I+E+
Sbjct: 99  IAEK 102

 Score = 33.9 bits (76), Expect = 0.75
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 79  DLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ 195
           +L   AVP    G ++GKGG+T+ E    +GA ++ISK+
Sbjct: 407 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 445
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein
          Length = 606

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 94  AVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI-KLFNVRGQRHEIDNAIRF 270
           +VP    G +IG+GGETIR IC  SGA +   K+      + +L  + G + E+  A   
Sbjct: 130 SVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHL 189

Query: 271 ISER 282
           I E+
Sbjct: 190 ILEK 193
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein
          Length = 560

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 94  AVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI-KLFNVRGQRHEIDNAIRF 270
           +VP    G +IG+GGETIR IC  SGA +   K+      + +L  + G + E+  A   
Sbjct: 130 SVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHL 189

Query: 271 ISER 282
           I E+
Sbjct: 190 ILEK 193
>sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 (Neuro-oncological ventral antigen 1)
           (Ventral neuron-specific protein 1)
          Length = 493

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +1

Query: 10  QLLANKDTKTYPKLTFAQPPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEIS 189
           Q L +  T T    +       A+     VP   AGL+IGKGG T++ I  +SGA+V++S
Sbjct: 135 QTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS 194

Query: 190 -KQQTADPAIKLFNVRGQRHEIDNAIRFISER 282
            K    +   ++  V G+  +   A+  I ++
Sbjct: 195 QKPDGINLQERVVTVSGEPEQNRKAVELIIQK 226

 Score = 36.2 bits (82), Expect = 0.15
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = +1

Query: 97  VPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI--KLFNVRGQRHEIDNAIRF 270
           +P+  AG +IGKGG+TI ++   +GA +++SK +   P    ++  ++G    ++    F
Sbjct: 42  IPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGF 101

Query: 271 ISER 282
           I+E+
Sbjct: 102 IAEK 105

 Score = 34.3 bits (77), Expect = 0.58
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 79  DLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ 195
           D+   AVP    G ++GKGG+T+ E    +GA ++ISK+
Sbjct: 408 DVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 446
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,074,534
Number of Sequences: 369166
Number of extensions: 2231879
Number of successful extensions: 7659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7637
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10766113875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)