Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J22
(1010 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein ... 78 3e-14
sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 ... 77 1e-13
sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein ... 75 3e-13
sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein ... 75 3e-13
sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein ... 74 5e-13
sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2 74 7e-13
sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 (Neuro-onc... 45 3e-04
sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein 44 0.001
sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein 44 0.001
sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 (Neuro-onc... 42 0.002
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
Length = 572
Score = 78.2 bits (191), Expect = 3e-14
Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 30/177 (16%)
Frame = +1
Query: 67 PENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRGQ 240
P Y VP +K GLVIGKGGE I+ I +SGA VE+ + +DP ++ F +RG
Sbjct: 351 PGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGV 410
Query: 241 RHEIDNAIRFISERAG----------------IPVGPPH--SYYPNXXXXXXXXXXXXXX 366
+I+ A + I E+ G P PPH ++ P
Sbjct: 411 PQQIEVARQLIDEKVGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPRSSGCFPNMAAKVNG 470
Query: 367 XXXXPAAAGSQQGWTQGAASA----------MPAPTINPQTGQPDYSAAWAEYYRRQ 507
+G TQG S +P+ PQ+ QP+YS AW +YY++Q
Sbjct: 471 NPHSTPVSGPPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQPNYSKAWEDYYKKQ 527
Score = 37.7 bits (86), Expect = 0.052
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 73 NADLCVYAVPTEKAGLVIGKGGETIREICGRSGA-FVEISKQQTADPAIKLFNVRGQRHE 249
N+ + +P K GLVIG+GGETI+++ R+G V I A K + G +
Sbjct: 161 NSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFK 220
Query: 250 IDNAIRFISE 279
+ A + E
Sbjct: 221 VQQAREMVLE 230
Score = 34.3 bits (77), Expect = 0.58
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 91 YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADP 210
+ VP + G +IG+GGE I I SG ++I+ + + P
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP 121
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (MAP2 RNA
trans-acting protein 1) (MARTA1)
Length = 721
Score = 76.6 bits (187), Expect = 1e-13
Identities = 61/202 (30%), Positives = 79/202 (39%), Gaps = 62/202 (30%)
Frame = +1
Query: 91 YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRGQRHEIDNAI 264
+++PT K GLVIG+GGE ++ I ++GAFVEIS+Q DP KLF +RG +ID+A
Sbjct: 430 FSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAK 489
Query: 265 RFISERAG---IPVG----------------------------------PPHSYYPNXXX 333
+ I E+ PVG PPH Y P
Sbjct: 490 QLIEEKIEGPLCPVGPGPGGPGPAGPMGPFHPGPFNQGPPGAPPHAGGPPPHQYPPQGWG 549
Query: 334 XXXXXXXXXXXXXXXPAAAGSQQ-----------------GWTQGAASAMPAPTIN---- 450
AAA + G G A A AP
Sbjct: 550 NTYPEWQPPAPHDPNKAAAAATDPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPP 609
Query: 451 --PQTGQPDYSAAWAEYYRRQG 510
P TGQ DY+ AW EYY++ G
Sbjct: 610 QPPPTGQSDYTKAWEEYYKKIG 631
Score = 38.5 bits (88), Expect = 0.031
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 70 ENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI-KLFNVRGQRH 246
+N + +P KAGLVIGKGGETI+++ R+G + + + + + + K + G +
Sbjct: 232 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPY 291
Query: 247 EIDNAIRFISE 279
++ A + +
Sbjct: 292 KVQQACEMVMD 302
Score = 38.1 bits (87), Expect = 0.040
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 451 PQTGQPDYSAAWAEYYRRQGMH 516
P QPDYSAAWAEYYR+Q +
Sbjct: 668 PPGSQPDYSAAWAEYYRQQAAY 689
Score = 37.0 bits (84), Expect = 0.089
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +1
Query: 64 PPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAIKLFNVRGQR 243
PP + Y VP GL+IG+GGE I +I SG V+IS P + ++ G
Sbjct: 141 PPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE-RSVSLTGAP 199
Query: 244 HEIDNAIRFISERAGI-PVGPPHSYYPN 324
+ A + + GPP ++ N
Sbjct: 200 ESVQKAKMMLDDIVSRGRGGPPGQFHDN 227
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 (FUSE-binding protein 1)
(FBP)
Length = 651
Score = 75.1 bits (183), Expect = 3e-13
Identities = 57/170 (33%), Positives = 72/170 (42%), Gaps = 25/170 (14%)
Frame = +1
Query: 64 PPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEI--SKQQTADPAIKLFNVRG 237
PP + VPT K GL+IGKGGETI+ I +SGA +E+ S ADP +KLF +RG
Sbjct: 368 PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRG 427
Query: 238 QRHEIDNAIRFISERAGIPV---GPPHSYYPN-------------------XXXXXXXXX 351
+ID A + I E+ G PV GPP + P+
Sbjct: 428 TPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNP 487
Query: 352 XXXXXXXXXPAAAGSQQGWTQGAAS-AMPAPTINPQTGQPDYSAAWAEYY 498
P A + QGW AP + G SAAWA YY
Sbjct: 488 GPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGADPNSAAWAAYY 537
Score = 47.4 bits (111), Expect = 7e-05
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Frame = +1
Query: 379 PAAAGS---QQGWTQ---GAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 516
PA AG + W + A+PAP P GQPDYSAAWAEYYR+Q +
Sbjct: 570 PAPAGQVDYTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAY 621
Score = 40.4 bits (93), Expect = 0.008
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 97 VPTEKAGLVIGKGGETIREICGRSGA-FVEISKQQTADPAIKLFNVRGQRHEIDNAIRFI 273
+P KAGLVIGKGGETI+++ R+G V I A K + G +++ A +
Sbjct: 188 IPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV 247
Query: 274 SE 279
E
Sbjct: 248 LE 249
Score = 31.2 bits (69), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 91 YAVPTEKAGLVIGKGGETIREICGRSGAFVEIS 189
Y VP G +IG+GGE I I SG ++I+
Sbjct: 101 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIA 133
Score = 30.8 bits (68), Expect = 6.4
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +1
Query: 97 VPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAIKLFNVRGQRHEIDNAIRFIS 276
+P G+VIG+ GE I++I +G ++ P ++ + G +A I+
Sbjct: 278 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPD-RIAQITGPPDRCQHAAEIIT 336
Query: 277 E-----RAGIPVGP 303
+ +AG P GP
Sbjct: 337 DLLRSVQAGNPGGP 350
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 (FUSE-binding protein 1)
(FBP) (DNA helicase V) (HDH V)
Length = 643
Score = 75.1 bits (183), Expect = 3e-13
Identities = 56/170 (32%), Positives = 72/170 (42%), Gaps = 25/170 (14%)
Frame = +1
Query: 64 PPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRG 237
PP + VPT K GL+IGKGGETI+ I +SGA +E+ + ADP +KLF +RG
Sbjct: 371 PPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG 430
Query: 238 QRHEIDNAIRFISERAGIPV---GPPHSYYPN-------------------XXXXXXXXX 351
+ID A + I E+ G PV GPP + P+
Sbjct: 431 TPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNP 490
Query: 352 XXXXXXXXXPAAAGSQQGWTQGAAS-AMPAPTINPQTGQPDYSAAWAEYY 498
P A + QGW AP + G SAAWA YY
Sbjct: 491 GPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGTDPNSAAWAAYY 540
Score = 49.3 bits (116), Expect = 2e-05
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Frame = +1
Query: 379 PAAAGS---QQGWTQ---GAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 516
PA AG + W + A+PAPT P GQPDYSAAWAEYYR+Q +
Sbjct: 573 PAPAGQVDYTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAY 624
Score = 40.4 bits (93), Expect = 0.008
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 97 VPTEKAGLVIGKGGETIREICGRSGA-FVEISKQQTADPAIKLFNVRGQRHEIDNAIRFI 273
+P KAGLVIGKGGETI+++ R+G V I A K + G +++ A +
Sbjct: 191 IPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV 250
Query: 274 SE 279
E
Sbjct: 251 LE 252
Score = 31.2 bits (69), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 91 YAVPTEKAGLVIGKGGETIREICGRSGAFVEIS 189
Y VP G +IG+GGE I I SG ++I+
Sbjct: 104 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIA 136
Score = 31.2 bits (69), Expect = 4.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +1
Query: 97 VPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAIKLFNVRGQRHEIDNAIRFIS 276
+P G+VIG+ GE I++I +G ++ P ++ + G +A I+
Sbjct: 281 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPE-RIAQITGPPDRCQHAAEIIT 339
Query: 277 E-----RAGIPVGP 303
+ +AG P GP
Sbjct: 340 DLLRSVQAGNPGGP 353
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (p75)
Length = 707
Score = 74.3 bits (181), Expect = 5e-13
Identities = 60/202 (29%), Positives = 78/202 (38%), Gaps = 62/202 (30%)
Frame = +1
Query: 91 YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRGQRHEIDNAI 264
+++PT K GLVIG+GGE ++ I ++GAFVEIS+Q T P KLF +RG +ID+
Sbjct: 427 FSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPTGTPTSKLFIIRGSPQQIDHCR 486
Query: 265 RFISERAG---IPVG----------------------------------PPHSYYPNXXX 333
+ I E+ PVG PPH Y P
Sbjct: 487 QLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWG 546
Query: 334 XXXXXXXXXXXXXXXPAAAGSQQ-----------------GWTQGAASAMPAPTIN---- 450
AAA + G G A A AP
Sbjct: 547 NTYPQWQPPAPHDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPP 606
Query: 451 --PQTGQPDYSAAWAEYYRRQG 510
P TGQ DY+ AW EYY++ G
Sbjct: 607 QPPPTGQSDYTKAWEEYYKKIG 628
Score = 38.5 bits (88), Expect = 0.031
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 70 ENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI-KLFNVRGQRH 246
+N + +P KAGLVIGKGGETI+++ R+G + + + + + + K + G +
Sbjct: 231 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPY 290
Query: 247 EIDNAIRFISE 279
++ A + +
Sbjct: 291 KVQQACEMVMD 301
Score = 38.1 bits (87), Expect = 0.040
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 451 PQTGQPDYSAAWAEYYRRQGMH 516
P QPDYSAAWAEYYR+Q +
Sbjct: 665 PPGSQPDYSAAWAEYYRQQAAY 686
Score = 37.0 bits (84), Expect = 0.089
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +1
Query: 64 PPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAIKLFNVRGQR 243
PP + Y VP GL+IG+GGE I +I SG V+IS P + ++ G
Sbjct: 140 PPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE-RSVSLTGAP 198
Query: 244 HEIDNAIRFISERAGI-PVGPPHSYYPN 324
+ A + + GPP ++ N
Sbjct: 199 ESVQKAKMMLDDIVSRGRGGPPGQFHDN 226
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2
Length = 769
Score = 73.9 bits (180), Expect = 7e-13
Identities = 59/198 (29%), Positives = 78/198 (39%), Gaps = 58/198 (29%)
Frame = +1
Query: 91 YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ--QTADPAIKLFNVRGQRHEIDNAI 264
+++PT K GLVIG+GGE ++ I + GAFVEIS+Q DP KLF +RG +I++A
Sbjct: 491 FSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAK 550
Query: 265 RFISERAG---IPVG-------------------------------PPHSYYPNXXXXXX 342
+ I E+ PVG PPH Y P
Sbjct: 551 QPIEEKIEGPLCPVGPGPGPGGPPGPAGPMGPFNPGPFNQGPPGGPPPHQYPPQGWGNTY 610
Query: 343 XXXXXXXXXXXXPAAAGSQ----------------QGWTQGAASAMPAPTIN------PQ 456
AAA + G G A AP + P
Sbjct: 611 PQWQPPAPHDPSKAAAAADPNAAWAGYYSHYYQQPPGPVPGQPPAPTAPPVQGEPPQPPP 670
Query: 457 TGQPDYSAAWAEYYRRQG 510
TGQ DY+ AW EYY++ G
Sbjct: 671 TGQSDYTKAWEEYYKKIG 688
Score = 39.7 bits (91), Expect = 0.014
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +1
Query: 70 ENADLCVYAVPTEKAGLVIGKGGETIREICGRSGA---FVEISKQQTADPAIKLFNVRGQ 240
+N + +P KAGLVIGKGGETI+++ R+G F++ Q T K + G
Sbjct: 294 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNT--NVDKPLRIIGD 351
Query: 241 RHEIDNAIRFISE 279
+++ A + +
Sbjct: 352 PYKVQQACEMVMD 364
Score = 38.9 bits (89), Expect = 0.023
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +1
Query: 409 TQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 516
T G A P P QPDYSAAWAEYYR+Q +
Sbjct: 719 TGGGPGAPPGP-------QPDYSAAWAEYYRQQAAY 747
Score = 37.0 bits (84), Expect = 0.089
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Frame = +1
Query: 43 PKLTFAQPPENADLCV--YAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI 216
P+L PP + Y VP GL+IG+GGE I +I SG V+IS P
Sbjct: 195 PQLGPMHPPPRSTTVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE- 253
Query: 217 KLFNVRGQRHEIDNA----IRFISERAGIPVGPPHSY 315
+ ++ G + A +S G P G H Y
Sbjct: 254 RSVSLTGSPEAVQKAKLMLDDIVSRGRGGPPGQFHDY 290
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 (Neuro-oncological ventral antigen 2)
(Astrocytic NOVA1-like RNA-binding protein)
Length = 492
Score = 45.4 bits (106), Expect = 3e-04
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 67 PENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEIS-KQQTADPAIKLFNVRGQR 243
P+ A VP AGL+IGKGG T++ + +SGA+V++S K + + ++ V G+
Sbjct: 127 PDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEP 186
Query: 244 HEIDNAIRFISER 282
++ A+ I ++
Sbjct: 187 EQVHKAVSAIVQK 199
Score = 37.7 bits (86), Expect = 0.052
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 97 VPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI--KLFNVRGQRHEIDNAIRF 270
+P+ AG +IGKGG+TI ++ +GA +++SK + P ++ V+G ++ F
Sbjct: 39 IPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSF 98
Query: 271 ISER 282
I+E+
Sbjct: 99 IAEK 102
Score = 33.9 bits (76), Expect = 0.75
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 79 DLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ 195
+L AVP G ++GKGG+T+ E +GA ++ISK+
Sbjct: 407 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 445
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein
Length = 606
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 94 AVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI-KLFNVRGQRHEIDNAIRF 270
+VP G +IG+GGETIR IC SGA + K+ + +L + G + E+ A
Sbjct: 130 SVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHL 189
Query: 271 ISER 282
I E+
Sbjct: 190 ILEK 193
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein
Length = 560
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 94 AVPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI-KLFNVRGQRHEIDNAIRF 270
+VP G +IG+GGETIR IC SGA + K+ + +L + G + E+ A
Sbjct: 130 SVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHL 189
Query: 271 ISER 282
I E+
Sbjct: 190 ILEK 193
>sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 (Neuro-oncological ventral antigen 1)
(Ventral neuron-specific protein 1)
Length = 493
Score = 42.4 bits (98), Expect = 0.002
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 10 QLLANKDTKTYPKLTFAQPPENADLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEIS 189
Q L + T T + A+ VP AGL+IGKGG T++ I +SGA+V++S
Sbjct: 135 QTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS 194
Query: 190 -KQQTADPAIKLFNVRGQRHEIDNAIRFISER 282
K + ++ V G+ + A+ I ++
Sbjct: 195 QKPDGINLQERVVTVSGEPEQNRKAVELIIQK 226
Score = 36.2 bits (82), Expect = 0.15
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 97 VPTEKAGLVIGKGGETIREICGRSGAFVEISKQQTADPAI--KLFNVRGQRHEIDNAIRF 270
+P+ AG +IGKGG+TI ++ +GA +++SK + P ++ ++G ++ F
Sbjct: 42 IPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGF 101
Query: 271 ISER 282
I+E+
Sbjct: 102 IAEK 105
Score = 34.3 bits (77), Expect = 0.58
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 79 DLCVYAVPTEKAGLVIGKGGETIREICGRSGAFVEISKQ 195
D+ AVP G ++GKGG+T+ E +GA ++ISK+
Sbjct: 408 DVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 446
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,074,534
Number of Sequences: 369166
Number of extensions: 2231879
Number of successful extensions: 7659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7637
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10766113875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)