Planaria EST Database


DrC_01463

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01463
         (950 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CBE3|WDR37_MOUSE  WD-repeat protein 37                       188   2e-47
sp|Q9Y2I8|WD37_HUMAN  WD-repeat protein 37                        186   8e-47
sp|Q8YRI1|YY46_ANASP  Hypothetical WD-repeat protein alr3466       75   3e-13
sp|P56093|TUP1_CANAL  Transcriptional repressor TUP1               74   6e-13
sp|Q91WQ5|TAF5L_MOUSE  TAF5-like RNA polymerase II p300/CBP-...    73   1e-12
sp|P49027|GBLP_ORYSA  Guanine nucleotide-binding protein bet...    72   2e-12
sp|O18640|GBLP_DROME  Guanine nucleotide-binding protein bet...    71   5e-12
sp|O75529|TAF5L_HUMAN  TAF5-like RNA polymerase II p300/CBP-...    70   9e-12
sp|Q7KNS3|LIS1_DROME  Lissencephaly-1 homolog (Lissencephaly...    69   1e-11
sp|P38129|TAF5_YEAST  Transcription initiation factor TFIID ...    69   1e-11
>sp|Q8CBE3|WDR37_MOUSE WD-repeat protein 37
          Length = 496

 Score =  188 bits (477), Expect = 2e-47
 Identities = 105/213 (49%), Positives = 136/213 (63%), Gaps = 3/213 (1%)
 Frame = +3

Query: 156 AADFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASR 335
           AAD+L+   Q+VTASWDR   +YD+ T   V SLTGHD  LT   T+P     L VT+SR
Sbjct: 288 AADWLVGGKQVVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPT--QRLVVTSSR 345

Query: 336 DCTFRLWDFRCSSTE-VHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNP 512
           D TFRLWDFR  S   V+V QGH   V+S  F     + +VS   DR  K+WDL+N R+P
Sbjct: 346 DTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFT--VGDNVVSGSDDRTVKVWDLKNMRSP 403

Query: 513 LHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTSI 692
           +  IRTDS INR+ V    KI+ALP DNR V++FD++ G R+ARLPR+S Q H R+V   
Sbjct: 404 IATIRTDSAINRINVCVGQKIIALPHDNRQVRLFDMS-GVRLARLPRSSRQGHRRMVCCS 462

Query: 693 AWNADGGGKP--NFYSAGFDQQLIAWHLQLPTL 785
           AW+ D    P  N ++ GFD+Q I W++ +P L
Sbjct: 463 AWSED---HPICNLFTCGFDRQAIGWNINIPAL 492
>sp|Q9Y2I8|WD37_HUMAN WD-repeat protein 37
          Length = 494

 Score =  186 bits (472), Expect = 8e-47
 Identities = 103/211 (48%), Positives = 134/211 (63%), Gaps = 1/211 (0%)
 Frame = +3

Query: 156 AADFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASR 335
           A+D+L+   Q VTASWDR   +YD+ T   V SLTGHD  LT   T+P     L VT+SR
Sbjct: 286 ASDWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPT--QRLVVTSSR 343

Query: 336 DCTFRLWDFRCSSTE-VHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNP 512
           D TFRLWDFR  S   V+V QGH   V+S  F     + +VS   DR  K+WDL+N R+P
Sbjct: 344 DTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFT--VGDNVVSGSDDRTVKVWDLKNMRSP 401

Query: 513 LHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTSI 692
           +  IRTDS INR+ V    KI+ALP DNR V++FD++ G R+ARLPR+S Q H R+V   
Sbjct: 402 IATIRTDSAINRINVCVGQKIIALPHDNRQVRLFDMS-GVRLARLPRSSRQGHRRMVCCS 460

Query: 693 AWNADGGGKPNFYSAGFDQQLIAWHLQLPTL 785
           AW+ D     N ++ GFD+Q I W++ +P L
Sbjct: 461 AWSED-HPVCNLFTCGFDRQAIGWNINIPAL 490
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
          Length = 1526

 Score = 75.1 bits (183), Expect = 3e-13
 Identities = 57/202 (28%), Positives = 101/202 (50%)
 Frame = +3

Query: 165  FLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDCT 344
            F  N   L   S D++ R++DI++   + +L GH   +  V  +P  D A   + S D T
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSP--DGATLASGSGDQT 1181

Query: 345  FRLWDFRCSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVI 524
             RLWD   SS  +++ QGH   V+SV F  + S  L S  +D+  ++W++ +S+      
Sbjct: 1182 VRLWDI-SSSKCLYILQGHTSWVNSVVFNPDGS-TLASGSSDQTVRLWEINSSKCLCTFQ 1239

Query: 525  RTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTSIAWNA 704
               S +N +  +P G ++A    +++V+++D++    +     ++ Q HT  V S+A+N 
Sbjct: 1240 GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL-----HTFQGHTNWVNSVAFNP 1294

Query: 705  DGGGKPNFYSAGFDQQLIAWHL 770
            DG       S   DQ +  W +
Sbjct: 1295 DGS---MLASGSGDQTVRLWEI 1313

 Score = 70.1 bits (170), Expect = 9e-12
 Identities = 54/207 (26%), Positives = 101/207 (48%)
 Frame = +3

Query: 150  LSAADFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTA 329
            +++  F  +   L + S D+  R++DI++G  + +  GH   +  V  +P  +  +  + 
Sbjct: 909  VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSP--NSLMLASG 966

Query: 330  SRDCTFRLWDFRCSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRN 509
            S D T RLWD   S   +++ QGH G V SV+F  + S  L +   D+  ++WD+ +S+ 
Sbjct: 967  SSDQTVRLWDI-SSGECLYIFQGHTGWVYSVAFNLDGS-MLATGSGDQTVRLWDISSSQC 1024

Query: 510  PLHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTS 689
                    S +  +     G ++A   D+++V+++D++ G  +  L     Q HT  V S
Sbjct: 1025 FYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTL-----QGHTSCVRS 1079

Query: 690  IAWNADGGGKPNFYSAGFDQQLIAWHL 770
            + ++ DG       S G DQ +  W +
Sbjct: 1080 VVFSPDGA---MLASGGDDQIVRLWDI 1103

 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 55/204 (26%), Positives = 105/204 (51%), Gaps = 1/204 (0%)
 Frame = +3

Query: 150  LSAADFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTA 329
            ++A  F  +   L + S D+  R++DI++   +  L GH   +  V  NP  D +   + 
Sbjct: 1161 VNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP--DGSTLASG 1218

Query: 330  SRDCTFRLWDFRCSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRN 509
            S D T RLW+   SS  +   QGH   V+SV F  + S  L S  +D+  ++WD+ +S+ 
Sbjct: 1219 SSDQTVRLWEIN-SSKCLCTFQGHTSWVNSVVFNPDGS-MLASGSSDKTVRLWDISSSK- 1275

Query: 510  PLHVIRTDSP-INRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVT 686
             LH  +  +  +N +A +P G ++A    +++V++++++    +     ++ Q HT  V+
Sbjct: 1276 CLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCL-----HTFQGHTSWVS 1330

Query: 687  SIAWNADGGGKPNFYSAGFDQQLI 758
            S+ ++ DG       ++G D Q +
Sbjct: 1331 SVTFSPDG----TMLASGSDDQTV 1350

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 1/196 (0%)
 Frame = +3

Query: 186  LVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDCTFRLWDFR 365
            L + S D+  R++DI++G+ + +L GH   +  V  +P  D A+  +   D   RLWD  
Sbjct: 1047 LASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSP--DGAMLASGGDDQIVRLWDI- 1103

Query: 366  CSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIRTDSP-I 542
             S   ++  QG+   V  + F  N    L +  +D+  ++WD+ +S+  L+ ++  +  +
Sbjct: 1104 SSGNCLYTLQGYTSWVRFLVFSPN-GVTLANGSSDQIVRLWDI-SSKKCLYTLQGHTNWV 1161

Query: 543  NRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTSIAWNADGGGKP 722
            N +A  P G  +A    +++V+++D++    +  L     Q HT  V S+ +N DG    
Sbjct: 1162 NAVAFSPDGATLASGSGDQTVRLWDISSSKCLYIL-----QGHTSWVNSVVFNPDGS--- 1213

Query: 723  NFYSAGFDQQLIAWHL 770
               S   DQ +  W +
Sbjct: 1214 TLASGSSDQTVRLWEI 1229

 Score = 54.7 bits (130), Expect = 4e-07
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 1/182 (0%)
 Frame = +3

Query: 216  RIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDCTFRLWDFRCSSTEVHVQQ 395
            R ++ ATG E+ +  GH+  +  V  +   D  +  + S D T RLWD   S   +   +
Sbjct: 889  RFWEAATGKELLTCKGHNSWVNSVGFS--QDGKMLASGSDDQTVRLWDI-SSGQCLKTFK 945

Query: 396  GHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIRTDSP-INRLAVHPHGK 572
            GH   V SV F  NS   L S  +D+  ++WD+ +S   L++ +  +  +  +A +  G 
Sbjct: 946  GHTSRVRSVVFSPNSL-MLASGSSDQTVRLWDI-SSGECLYIFQGHTGWVYSVAFNLDGS 1003

Query: 573  IVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTSIAWNADGGGKPNFYSAGFDQQ 752
            ++A    +++V+++D++             Q HT  V S+ +++DG       ++G D Q
Sbjct: 1004 MLATGSGDQTVRLWDISSSQCFYIF-----QGHTSCVRSVVFSSDGA----MLASGSDDQ 1054

Query: 753  LI 758
             +
Sbjct: 1055 TV 1056
>sp|P56093|TUP1_CANAL Transcriptional repressor TUP1
          Length = 514

 Score = 73.9 bits (180), Expect = 6e-13
 Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 16/213 (7%)
 Frame = +3

Query: 183 QLVTASWDRLGRIYDIATGSEVASLTGH--------------DLPLTDVRTNPVADHALA 320
           + +    ++  +++++ TG  VA L                 DL +  V  +P  D  L 
Sbjct: 215 KFIATGCNKTTQVFNVTTGELVAKLIDESSNENKDDNTTASGDLYIRSVCFSP--DGKLL 272

Query: 321 VTASRDCTFRLWDFRCSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRN 500
            T + D   R+WD       + + +GH   + S+ F  +  ++LVS   DR+ +IWDLR 
Sbjct: 273 ATGAEDKLIRIWDLSTKRI-IKILRGHEQDIYSLDFFPDG-DRLVSGSGDRSVRIWDLRT 330

Query: 501 SRNPLHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLP--RNSNQSHT 674
           S+  L  +  +  +  +AV P GK++A    +R+V+V+D   G  + RL     +   H 
Sbjct: 331 SQCSL-TLSIEDGVTTVAVSPDGKLIAAGSLDRTVRVWDSTTGFLVERLDSGNENGNGHE 389

Query: 675 RIVTSIAWNADGGGKPNFYSAGFDQQLIAWHLQ 773
             V S+A++ +G       S   D+ +  WHL+
Sbjct: 390 DSVYSVAFSNNG---EQIASGSLDRTVKLWHLE 419

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 14/207 (6%)
 Frame = +3

Query: 162 DFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDC 341
           DF  + D+LV+ S DR  RI+D+ T     +L+  D  +T V  +P  D  L    S D 
Sbjct: 306 DFFPDGDRLVSGSGDRSVRIWDLRTSQCSLTLSIED-GVTTVAVSP--DGKLIAAGSLDR 362

Query: 342 TFRLWDFRCSSTEVHVQQ---------GHNGIVSSVSFVGNSSEKLVSAGADRACKIWDL 494
           T R+WD   S+T   V++         GH   V SV+F  N+ E++ S   DR  K+W L
Sbjct: 363 TVRVWD---STTGFLVERLDSGNENGNGHEDSVYSVAF-SNNGEQIASGSLDRTVKLWHL 418

Query: 495 -----RNSRNPLHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNS 659
                + S   +  I     +  +   P  + +     +R V  +D   G  +  L    
Sbjct: 419 EGKSDKKSTCEVTYIGHKDFVLSVCCTPDNEYILSGSKDRGVIFWDQASGNPLLML---- 474

Query: 660 NQSHTRIVTSIAWNADGGGKPNFYSAG 740
            Q H   V S+A + +  G    ++ G
Sbjct: 475 -QGHRNSVISVAVSLNSKGTEGIFATG 500
>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated
           factor 65 kDa subunit 5L (PCAF-associated factor 65
           beta) (PAF65-beta)
          Length = 589

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 55/214 (25%), Positives = 97/214 (45%)
 Frame = +3

Query: 147 PLSAADFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVT 326
           P+ +  FL +   L++ S D   R +D+ + +      GH  P+ DV  +P + +    +
Sbjct: 344 PVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYF--AS 401

Query: 327 ASRDCTFRLWDFRCSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSR 506
            S D T RLW F   +  + +  GH   V  V F  NS+  L +   D+  ++W  +   
Sbjct: 402 GSHDRTARLWSFD-RTYPLRIYAGHLADVDCVKFHPNSNY-LATGSTDKTVRLWSAQQGN 459

Query: 507 NPLHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVT 686
           +         P+  L+  P+GK +A   +++ +K++DL  GT    L     + HT  +T
Sbjct: 460 SVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKEL-----RGHTDSIT 514

Query: 687 SIAWNADGGGKPNFYSAGFDQQLIAWHLQLPTLN 788
           S+A++ D G      SA  D  +  W ++    N
Sbjct: 515 SLAFSPDSG---LIASASMDNSVRVWDIRSTCCN 545
>sp|P49027|GBLP_ORYSA Guanine nucleotide-binding protein beta subunit-like protein
           (GPB-LR) (RWD)
          Length = 334

 Score = 72.4 bits (176), Expect = 2e-12
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
 Frame = +3

Query: 189 VTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDCTFRLWDF-- 362
           ++ SWD   R++D++TG       GHD  +  V  +   D+   V+ASRD T +LW+   
Sbjct: 91  LSGSWDGELRLWDLSTGVTTRRFVGHDKDVLSVAFS--VDNRQIVSASRDRTIKLWNTLG 148

Query: 363 RCSST---EVHVQQGHNGIVSSVSFVGNSSEKLVSAGA-DRACKIWDLRNSRNPLHVIRT 530
            C  T   ++   +GHNG VS V F  N+ +  + +G+ DR  K+W+L N +   ++   
Sbjct: 149 ECKYTIGGDLGGGEGHNGWVSCVRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGH 208

Query: 531 DSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNS 659
              +N +AV P G + A    +    ++DL  G R+  L   S
Sbjct: 209 GGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGS 251

 Score = 39.3 bits (90), Expect = 0.017
 Identities = 29/121 (23%), Positives = 56/121 (46%)
 Frame = +3

Query: 186 LVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDCTFRLWDFR 365
           +V+ SWDR  +++++       +L GH   +  V  +P  D +L  +  +D    LWD  
Sbjct: 182 IVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSP--DGSLCASGGKDGVTLLWDLA 239

Query: 366 CSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIRTDSPIN 545
                  +  G   I+ S+ F  N     + A    + KIWDL  S++ +  ++ + P++
Sbjct: 240 EGKRLYSLDAG--SIIHSLCFSPN--RYWLCAATQDSIKIWDL-ESKHIVQDLKPEIPVS 294

Query: 546 R 548
           +
Sbjct: 295 K 295

 Score = 38.9 bits (89), Expect = 0.022
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
 Frame = +3

Query: 387 VQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIRTDS-------PIN 545
           V  GHN +V++++   ++S  +VS+  D++  +WDL    NP+  +   +       P  
Sbjct: 13  VMHGHNDVVTAIATPIDNSPFIVSSSRDKSLLVWDL---TNPVQNVGEGAGASEYGVPFR 69

Query: 546 RLAVHPH-GKIVALPMDNR---------SVKVFDLNLGTRIARLPRNSNQSHTRIVTSIA 695
           RL  H H  + V L  D +          ++++DL+ G    R        H + V S+A
Sbjct: 70  RLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLSTGVTTRRF-----VGHDKDVLSVA 124

Query: 696 WNADGGGKPNFYSAGFDQQLIAWH 767
           ++ D        SA  D+ +  W+
Sbjct: 125 FSVD---NRQIVSASRDRTIKLWN 145

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 37/193 (19%), Positives = 78/193 (40%), Gaps = 15/193 (7%)
 Frame = +3

Query: 261 GHDLPLTDVRTNPVADHALAVTASRDCTFRLWDFR---------CSSTEVHVQ----QGH 401
           GH+  +T + T P+ +    V++SRD +  +WD             ++E  V      GH
Sbjct: 16  GHNDVVTAIAT-PIDNSPFIVSSSRDKSLLVWDLTNPVQNVGEGAGASEYGVPFRRLTGH 74

Query: 402 NGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIRTDSPINRLAVHPHGKIVA 581
           +  V  V  + +  +  +S   D   ++WDL         +  D  +  +A     + + 
Sbjct: 75  SHFVQDV-VLSSDGQFALSGSWDGELRLWDLSTGVTTRRFVGHDKDVLSVAFSVDNRQIV 133

Query: 582 LPMDNRSVKVFDLNLGTRIARL--PRNSNQSHTRIVTSIAWNADGGGKPNFYSAGFDQQL 755
               +R++K+++  LG     +       + H   V+ + ++ +   +P   S  +D+ +
Sbjct: 134 SASRDRTIKLWN-TLGECKYTIGGDLGGGEGHNGWVSCVRFSPN-TFQPTIVSGSWDRTV 191

Query: 756 IAWHLQLPTLNIN 794
             W+L    L  N
Sbjct: 192 KVWNLTNCKLRCN 204
>sp|O18640|GBLP_DROME Guanine nucleotide-binding protein beta subunit-like protein
           (Receptor of activated protein kinase C homolog)
          Length = 318

 Score = 70.9 bits (172), Expect = 5e-12
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 3/169 (1%)
 Frame = +3

Query: 159 ADFLLNRD--QLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTAS 332
           +D +L+ D    ++ SWD+  R++D+A G       GH   +  V  +  AD+   V+ S
Sbjct: 68  SDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFS--ADNRQIVSGS 125

Query: 333 RDCTFRLWDFRCSSTEVHVQQGHNGIVSSVSFVGNSSEK-LVSAGADRACKIWDLRNSRN 509
           RD T +LW+          + GH   VS V F  N S   +VS G DR  K+W+L N + 
Sbjct: 126 RDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLANCKL 185

Query: 510 PLHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRN 656
             +    +  +N + V P G +      +    ++DLN G  +  L  N
Sbjct: 186 KNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHN 234

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
 Frame = +3

Query: 396 GHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIRTDSPINRLAVHPH--- 566
           GHNG V+ ++      + ++SA  D+   +W L    +  +      P  RL  H H   
Sbjct: 13  GHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNY----GYPQKRLYGHSHFIS 68

Query: 567 -------GKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTSIAWNAD 707
                  G        +++++++DL  G    R      + HT+ V S+A++AD
Sbjct: 69  DVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRF-----EGHTKDVLSVAFSAD 117
>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated
           factor 65 kDa subunit 5L (PCAF-associated factor 65
           beta) (PAF65-beta)
          Length = 589

 Score = 70.1 bits (170), Expect = 9e-12
 Identities = 53/209 (25%), Positives = 95/209 (45%)
 Frame = +3

Query: 147 PLSAADFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVT 326
           P+ +  FL +   L++ S D   R +D+ + +      GH  P+ D+  +P + +    +
Sbjct: 344 PVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYF--AS 401

Query: 327 ASRDCTFRLWDFRCSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSR 506
            S D T RLW F   +  + +  GH   V  V F  NS+  L +   D+  ++W  +   
Sbjct: 402 GSHDRTARLWSFD-RTYPLRIYAGHLADVDCVKFHPNSNY-LATGSTDKTVRLWSAQQGN 459

Query: 507 NPLHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVT 686
           +         P+  LA  P+GK +A   +++ +K++DL  GT    L     + HT  +T
Sbjct: 460 SVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKEL-----RGHTDNIT 514

Query: 687 SIAWNADGGGKPNFYSAGFDQQLIAWHLQ 773
           S+ ++ D G      SA  D  +  W ++
Sbjct: 515 SLTFSPDSG---LIASASMDNSVRVWDIR 540

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
 Frame = +3

Query: 75  NPNSMY-------QTASLYSSFGSYTYK----DSAPLSAADFLLNRDQLVTASWDRLGRI 221
           +P S+Y       +TA L+S   +Y  +      A +    F  N + L T S D+  R+
Sbjct: 393 SPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRL 452

Query: 222 YDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDCTFRLWDFRCSSTEVHVQQGH 401
           +    G+ V   TGH  P+  +  +P   +    +A  D   +LWD   S T     +GH
Sbjct: 453 WSAQQGNSVRLFTGHRGPVLSLAFSPNGKYL--ASAGEDQRLKLWDL-ASGTLYKELRGH 509

Query: 402 NGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNS 503
              ++S++F  +S   + SA  D + ++WD+RN+
Sbjct: 510 TDNITSLTFSPDSG-LIASASMDNSVRVWDIRNT 542

 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 1/188 (0%)
 Frame = +3

Query: 225 DIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDCTFRLWDFRCSSTEVHVQQGHN 404
           D   G+E+  L GH  P+   R   +AD +  ++ S D + R WD   S T   + QGH 
Sbjct: 328 DDNAGTEMKILRGHCGPVYSTRF--LADSSGLLSCSEDMSIRYWDLG-SFTNTVLYQGHA 384

Query: 405 GIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIRTD-SPINRLAVHPHGKIVA 581
             V  +  +   S    S   DR  ++W    +  PL +     + ++ +  HP+   +A
Sbjct: 385 YPVWDLD-ISPYSLYFASGSHDRTARLWSFDRTY-PLRIYAGHLADVDCVKFHPNSNYLA 442

Query: 582 LPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTSIAWNADGGGKPNFYSAGFDQQLIA 761
               +++V+++    G  +          H   V S+A++ +G       SAG DQ+L  
Sbjct: 443 TGSTDKTVRLWSAQQGNSVRLFT-----GHRGPVLSLAFSPNG---KYLASAGEDQRLKL 494

Query: 762 WHLQLPTL 785
           W L   TL
Sbjct: 495 WDLASGTL 502
>sp|Q7KNS3|LIS1_DROME Lissencephaly-1 homolog (Lissencephaly1) (Dlis1) (DLis-1)
          Length = 411

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 54/189 (28%), Positives = 86/189 (45%)
 Frame = +3

Query: 186 LVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTASRDCTFRLWDFR 365
           +V+AS D   RI+D  TG    SL GH   + DV  +  A   L  + S D + +LWDF+
Sbjct: 123 MVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFD--AQGKLLASCSADLSIKLWDFQ 180

Query: 366 CSSTEVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIRTDSPIN 545
            S   +    GH+  VSSV+FV  + + ++SA  DR  K+W++               + 
Sbjct: 181 QSYECIKTMHGHDHNVSSVAFV-PAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVR 239

Query: 546 RLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTRIVTSIAWNADGGGKPN 725
            + VH  G I A   ++++++V+  N       L     + H   V  IAW  +      
Sbjct: 240 MVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVEL-----RDHEHTVECIAWAPEAAASAI 294

Query: 726 FYSAGFDQQ 752
             +AG D +
Sbjct: 295 NEAAGADNK 303

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
 Frame = +3

Query: 243 EVASLTGHDLPLTDVRTNPVADHALAVTASRDCTFRLWDFRCSSTEVHVQQGHNGIVSSV 422
           E  SLTGH   +T V  +P+   AL V+AS D T R+WDF     E  + +GH   V  V
Sbjct: 100 EKFSLTGHRASITRVIFHPI--FALMVSASEDATIRIWDFETGEYERSL-KGHTDSVQDV 156

Query: 423 SFVGNSSEKLVSAGADRACKIWDLRNSRNPLHVIR-TDSPINRLAVHPHGKIVALPMDNR 599
           +F     + L S  AD + K+WD + S   +  +   D  ++ +A  P G  V     +R
Sbjct: 157 AF-DAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDR 215

Query: 600 SVKVFDLNLG 629
           ++K++++  G
Sbjct: 216 TIKMWEVATG 225

 Score = 60.1 bits (144), Expect = 9e-09
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
 Frame = +3

Query: 150 LSAADFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALAVTA 329
           +S+  F+   D +++AS DR  +++++ATG  V + TGH   +  VR +   + ++  T 
Sbjct: 196 VSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVH--IEGSIFATC 253

Query: 330 SRDCTFRLWDFRCSSTEVHVQQGHNGI----------VSSVSFVGNSSEK--------LV 455
           S D T R+W       +V ++   + +           S+++    +  K        L 
Sbjct: 254 SNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLA 313

Query: 456 SAGADRACKIWDLRNSRNPLHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTR 635
           S   D+  +IWD+      L +   D+ +  LA HP GK +    D+++++V+DL     
Sbjct: 314 SGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRC 373

Query: 636 IARLPRNSNQSHTRIVTSIAWNADGGGKPNFYSAGFDQQLIAW 764
           +  L      +H    TSI ++      P   S   DQ +  W
Sbjct: 374 MKTL-----YAHQHFCTSIDFHK---AHPYVISGSVDQTVKVW 408
>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 (TBP-associated
            factor 5) (TBP-associated factor 90 kDa) (TAFII-90)
          Length = 798

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 51/215 (23%), Positives = 102/215 (47%), Gaps = 1/215 (0%)
 Frame = +3

Query: 141  SAPLSAADFLLNRDQLVTASWDRLGRIYDIATGSEVASLTGHDLPLTDVRTNPVADHALA 320
            S  + +  F  +   L++ S D+  R++ + T + + S  GH+ P+ DV  +P+  +   
Sbjct: 525  SGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYF-- 582

Query: 321  VTASRDCTFRLWDFRCSST-EVHVQQGHNGIVSSVSFVGNSSEKLVSAGADRACKIWDLR 497
             TAS D T RLW   C     + +  GH   V  VSF  N    + +  +D+ C++WD+ 
Sbjct: 583  ATASHDQTARLWS--CDHIYPLRIFAGHLNDVDCVSFHPNGCY-VFTGSSDKTCRMWDVS 639

Query: 498  NSRNPLHVIRTDSPINRLAVHPHGKIVALPMDNRSVKVFDLNLGTRIARLPRNSNQSHTR 677
               +    +   +P+  +AV P G+ ++   ++  + V+D+  G R+ ++  +   +   
Sbjct: 640  TGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNA--- 696

Query: 678  IVTSIAWNADGGGKPNFYSAGFDQQLIAWHLQLPT 782
             + S++++ +G       S G D  +  W L+  T
Sbjct: 697  -IYSLSYSKEGN---VLISGGADHTVRVWDLKKAT 727
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,917,484
Number of Sequences: 369166
Number of extensions: 2143811
Number of successful extensions: 6880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6322
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9895030780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)