Planaria EST Database


DrC_01462

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01462
         (736 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21783|NOTCH_XENLA  Neurogenic locus notch protein homolo...    37   0.055
sp|P98157|LRP1_CHICK  Low-density lipoprotein receptor-relat...    34   0.35 
sp|P09208|INSR_DROME  Insulin-like receptor precursor (DIR) ...    34   0.35 
sp|P46749|RM05_PROWI  Mitochondrial 60S ribosomal protein L5       34   0.46 
sp|P46023|GR101_LYMST  G-protein coupled receptor GRL101 pre...    33   0.60 
sp|P29166|PHF1_CLOPA  Periplasmic [Fe] hydrogenase 1 (Fe-onl...    33   0.60 
sp|Q03185|TS11_GIALA  Major surface trophozoite antigen 11 p...    33   1.0  
sp|P47722|DEOC_MYCPI  Deoxyribose-phosphate aldolase (Phosph...    32   1.3  
sp|Q9Y219|JAG2_HUMAN  Jagged-2 precursor (Jagged2) (HJ2)           32   1.8  
sp|Q9DA37|SAMD8_MOUSE  Sphingomyelin synthase-related 1 (Ste...    32   2.3  
>sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog precursor (XOTCH protein)
          Length = 2524

 Score = 37.0 bits (84), Expect = 0.055
 Identities = 47/215 (21%), Positives = 75/215 (34%), Gaps = 30/215 (13%)
 Frame = +3

Query: 90  NKLDNINCKC---VTNIQTDDKLINCTETPKIEYATNKKEYENGIYDIVTNTSERKENCE 260
           N+  +  C C    T    D+  + C  +P +   T ++  +   YD         +NCE
Sbjct: 196 NEFGSYRCTCQNRFTGRNCDEPYVPCNPSPCLNGGTCRQTDDTS-YDCTCLPGFSGQNCE 254

Query: 261 CVKKSSTTYKLISCSNNYQRI--KIPNSIYDYKCESPKP-------PPVVETKCLPDSNI 413
                     +  C +N  R      + +  Y C+ P           V E + +P++  
Sbjct: 255 --------ENIDDCPSNNCRNGGTCVDGVNTYNCQCPPDWTGQYCTEDVDECQLMPNA-- 304

Query: 414 SLSNGRFNVTTYKIINDKCVSDSNIVPCSECTKQYCAENRESCIGVKCNEEAEAH----- 578
              NG     TY   N  CV+          T + C+EN + C    C+  A  H     
Sbjct: 305 -CQNGGTCHNTYGGYNCVCVNG--------WTGEDCSENIDDCANAACHSGATCHDRVAS 355

Query: 579 ----CP-----ITCKICEPCPSN----ARDCETNP 644
               CP     + C +   C SN      +C+TNP
Sbjct: 356 FYCECPHGRTGLLCHLDNACISNPCNEGSNCDTNP 390
>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 precursor (LRP)
            (Alpha-2-macroglobulin receptor) (A2MR)
          Length = 4543

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 201  YENGIYDIVTNTSERKENCECVKKSSTTYKLISCSNNYQRIKIPNSIYD 347
            +E+  YD +TNT+   +  +C++  S+TY   +C   +Q++   NS  D
Sbjct: 3776 HEHKSYDCMTNTTMCGDEAQCIQAQSSTY--CTCRRGFQKVPDKNSCQD 3822
>sp|P09208|INSR_DROME Insulin-like receptor precursor (DIR) (DInr) (dIRH) [Contains:
           Insulin-like receptor alpha subunit; Insulin-like
           receptor beta 1 subunit; Insulin-like receptor beta 2
           subunit]
          Length = 2144

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
 Frame = +3

Query: 402 DSNISLSNGRFNVTTYKIINDKCVS-----DSNIVPCSECTKQYCAENRESCIGVKCNEE 566
           +S IS  N  FN     I  D C       DS  V  +EC      E      G+  N +
Sbjct: 562 ESCISCRNVSFN----NICMDSCPKGYYQFDSRCVTANECITLTKFETNSVYSGIPYNGQ 617

Query: 567 AEAHCPI------TCKICEPCPSNARDCE 635
              HCP         ++CEPCP    D E
Sbjct: 618 CITHCPTGYQKSENKRMCEPCPGGKCDKE 646
>sp|P46749|RM05_PROWI Mitochondrial 60S ribosomal protein L5
          Length = 231

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 11/150 (7%)
 Frame = +3

Query: 78  TTTKNKLDNINCKCVTNIQTDDKLINCTETPKIEYATNKKEYENG------IYDIVTNTS 239
           TT +    NI C+ +   Q    ++ C    KI   T+ K Y          +  +   +
Sbjct: 39  TTLQKYYKNIVCQDLCLKQDYKNIMECVSLNKIVCNTSSKHYAGEKESILPAFTALEMIT 98

Query: 240 ERKENCECVKKSSTTYKL-----ISCSNNYQRIKIPNSIYDYKCESPKPPPVVETKCLPD 404
            +K    C KKS +T+KL     + C N+ +     N++Y +     K   +V T+    
Sbjct: 99  GQKPKYTCAKKSISTFKLRQNQILGCKNSLR----GNTMYRF---LEKYISIVSTRIKDW 151

Query: 405 SNISLSNGRFNVTTYKIINDKCVSDSNIVP 494
           S    S+ + N  T     D  V +SN+ P
Sbjct: 152 SENYSSSNKSNSLTTAYNKDYVVLNSNLFP 181
>sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 precursor
          Length = 1115

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 456 INDKCVSDSNIVPCSE---CTKQYCAENRESCIGVKCNEEAEAHCPITCKICEPCP--SN 620
           I+ +C S  + V  S+   C    CA N +SC+   C EE +      C     CP  S+
Sbjct: 382 ISKRCDSVHDCVDWSDEMNCENHQCAANMKSCLSGHCIEEHK-----WCNFHRECPDGSD 436

Query: 621 ARDCETNP 644
            +DC+  P
Sbjct: 437 EKDCDPRP 444
>sp|P29166|PHF1_CLOPA Periplasmic [Fe] hydrogenase 1 (Fe-only hydrogenase) (CpI)
          Length = 574

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 13/143 (9%)
 Frame = +3

Query: 117 CVTNIQTDDKLINCTETPKIEYATNKKEYENGIYDIVTNTSERKENCECVKKSSTTYKLI 296
           C T I+ D  +IN       E   ++      I++       R+ENCE +K       +I
Sbjct: 62  CDTLIE-DGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKL------VI 114

Query: 297 SCSNNYQRIKIPNSIYDYKCESPKPPPVVETKCLPDSNISLSNGRFNVTTY--KIIN--- 461
                  +  +P    +Y  E  K   V  TKCL       + G+ N  TY  K +N   
Sbjct: 115 KYKARASKPFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNACGK-NTETYAMKFLNKNG 173

Query: 462 --------DKCVSDSNIVPCSEC 506
                   +KC  D+N + C +C
Sbjct: 174 KTIIGAEDEKCFDDTNCLLCGQC 196
>sp|Q03185|TS11_GIALA Major surface trophozoite antigen 11 precursor
          Length = 667

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 48/219 (21%), Positives = 79/219 (36%), Gaps = 8/219 (3%)
 Frame = +3

Query: 3   QKCACSLSCPGETVSTACVDGKIKTTTTKNKLDNINCKCVTNIQTDDKLINCTETPKIEY 182
           Q C    S PG T+ T      + +          N        T D +++C+E   I  
Sbjct: 72  QVCGKMSSVPGNTLCTTVSPDGVCSVAANEYFVPPNADA-----THDSVVSCSEETPIHL 126

Query: 183 ATNKKEYENGIYDIVTNTSERKENCECVKKSSTTYKLISCSNNYQRIKIPNSIYDYKCES 362
           A NK+    G+    T ++ +    +   K++T  K   C+  +  +  P+      CE 
Sbjct: 127 ANNKQYI--GVAGCATCSAPKAPGEDNTPKAATCTK---CAAGF--LHTPSEGLS-SCEE 178

Query: 363 PKPPPVVETKCLPDSN---ISLSNGRFNVTTYKIIND--KCV---SDSNIVPCSECTKQY 518
             P          +S     S + G       K I D  KC+   +  N + C +C+   
Sbjct: 179 TCPEGYFGHTATAESKKTCKSCTGGSSEAPNVKGIGDCLKCMYNEASGNTLTCEKCS--- 235

Query: 519 CAENRESCIGVKCNEEAEAHCPITCKICEPCPSNARDCE 635
            A+ + S     CN+        T + C  C S+  DCE
Sbjct: 236 -AQKKPSLDKTSCND-------CTGQNCAFCSSSGGDCE 266
>sp|P47722|DEOC_MYCPI Deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase)
           (Deoxyriboaldolase) (DERA)
          Length = 220

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = +3

Query: 144 KLINCTETPKIEYATNKKEYENGI--------YDIVTNTSERKENCECVKKSSTTYKLIS 299
           K+      P  + +T +K YE  I         D+V N SE KENC CV      YK + 
Sbjct: 56  KICTVVGFPLGQTSTKQKVYETKIAIKEGADEIDMVLNISEFKENCACVVNEIRKYKKV- 114

Query: 300 CSNNYQRIKIPNSI 341
           C     ++ +  ++
Sbjct: 115 CKKKILKVIVETAL 128
>sp|Q9Y219|JAG2_HUMAN Jagged-2 precursor (Jagged2) (HJ2)
          Length = 1238

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +3

Query: 459 NDKCVSDSNIVPCSECTKQYCAENRESCIGVKCNEEAEAHCPITCKICEPCPS--NARDC 632
           N  C+ DS        T  YC EN + C+G  C         +    C  CPS      C
Sbjct: 619 NFSCICDSGF------TGTYCHENIDDCLGQPCRNGGTCIDEVDAFRCF-CPSGWEGELC 671

Query: 633 ETNPFD 650
           +TNP D
Sbjct: 672 DTNPND 677
>sp|Q9DA37|SAMD8_MOUSE Sphingomyelin synthase-related 1 (Sterile alpha motif domain
           containing 8)
          Length = 478

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = -3

Query: 605 FADFACYWTMSFSFFIAFYTNTRFSIFCTVLLCTFATWHYVRIAHTFIINNFIRCNVKST 426
           F   A +   S   FIAFY  TR  ++   L  T A     R    F + +F  CNV  T
Sbjct: 399 FFILAAHEHYSIDVFIAFYITTRLFLYYHTLANTRAYHQSRRARIWFPMFSFFECNVNGT 458

Query: 425 V 423
           V
Sbjct: 459 V 459
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,102,056
Number of Sequences: 369166
Number of extensions: 1615958
Number of successful extensions: 5488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5470
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)