Planaria EST Database


DrC_01459

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01459
         (804 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48906|NU2M_PICCA  NADH-ubiquinone oxidoreductase chain 2...    33   0.91 
sp|P24882|COX2_ASCSU  Cytochrome c oxidase subunit 2 (Cytoch...    32   1.6  
sp|Q8N0U8|VKORL_HUMAN  Vitamin K epoxide reductase complex s...    31   3.5  
sp|O51309|Y331_BORBU  Hypothetical protein BB0331                  31   3.5  
sp|P24884|NU5M_ASCSU  NADH-ubiquinone oxidoreductase chain 5...    30   5.9  
sp|Q8CNJ4|ATPD_STAES  ATP synthase delta chain                     30   7.7  
sp|P15583|NU5M_LEITA  NADH-ubiquinone oxidoreductase chain 5...    30   7.7  
>sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 567

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
 Frame = +1

Query: 355 LILSSHLIGYSCLKRFQSSNKNGL------ISYLGQCLLGIYALCSCHNIMFS------N 498
           +I SS +     +    SSNK G       I  +G  ++ +Y+L    +I  S      N
Sbjct: 10  IIYSSIINNIDTINLLSSSNKIGWKLQNYNIIRIGIIII-LYSLYIFKDISLSYIFNNYN 68

Query: 499 QNLDLAEYVFGDGYMQYFFNIFCAILFLLSFVFIS 603
            N DL  Y+F D Y    FNI+  I+FLL  V IS
Sbjct: 69  NNNDLNIYIFNDLYKLNIFNIY--IIFLLLIVIIS 101
>sp|P24882|COX2_ASCSU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 232

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
 Frame = +1

Query: 481 NIMFSNQNLDLAEYVFGDGYMQYFFNIFCAILF--------------LLSFVFISSQYKL 618
           N  F + NL  +  +F   YM +F+N  C++LF              L SF F S + + 
Sbjct: 2   NNFFQDFNLLFSSSLFSS-YMDWFYNFNCSLLFGVLSFVSTMFVYLLLSSFYFKSKKIEY 60

Query: 619 KYGICFLGMATAILLV---ISDLNFRFWHGRLGCD 714
           ++G     +   ++LV   +  L+  +++G +  D
Sbjct: 61  QFGELLCSVFPTLILVMQMVPSLSLLYYYGLMNLD 95
>sp|Q8N0U8|VKORL_HUMAN Vitamin K epoxide reductase complex subunit 1-like protein 1
           (VKORC1-like protein 1)
          Length = 176

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +1

Query: 403 QSSNKNGLISYLGQCLLGIYALCSCHNIMFSNQNLDLAEYVFGDGYMQYF----FNIFCA 570
           Q ++  GLI Y+ Q LLG+ A      I+ ++  + +   ++   Y+ YF    F I C 
Sbjct: 85  QPNSVFGLIFYILQLLLGMTASAVAALILMTSSIMSVVGSLY-LAYILYFVLKEFCIICI 143

Query: 571 ILFLLSFVFISSQYK 615
           + ++L+F+ +   YK
Sbjct: 144 VTYVLNFLLLIINYK 158
>sp|O51309|Y331_BORBU Hypothetical protein BB0331
          Length = 51

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 207 LFTKRFFVTLCYFVCSFSIFIRKLFRGTSI*KLAYSKSSYKILWLCRVFLDIIISSYRLF 386
           +F K +F+ L +++  +S+ +R++F                   LC++   III SY LF
Sbjct: 5   IFNKMYFLFLIFYLKFYSLDLRRIF-------------------LCKILSKIIIESYTLF 45

Query: 387 VF 392
           ++
Sbjct: 46  MY 47
>sp|P24884|NU5M_ASCSU NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 547

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
 Frame = +1

Query: 349 SFLILSSHLIGYSCL----------KRFQSSNKN----GLISYLGQCLLGIYALCSCHNI 486
           SF+ L SH +  SCL             Q   +N    G + Y  Q  L +   C C  +
Sbjct: 279 SFIHLLSHALFKSCLFMQVGYLIHCSLGQQDGRNYSNLGNVPYFIQLQLLVTLFCLC-GL 337

Query: 487 MFSNQNLDLAEYVFGDGYMQYFFNIFCAILFLLSFVFISSQYKLKYG---------ICFL 639
           +FS+  +   +Y+    +  +F  +F  + F   F+     Y+L  G          CF 
Sbjct: 338 VFSSGAVS-KDYILEFFFSNFFMVVFACMFFFSVFLTFGYSYRLWKGFFMSFSRPVFCFS 396

Query: 640 GMAT----AILLVISDLNFRFW 693
                   ++LLV+  + F +W
Sbjct: 397 SSVVMNFLSLLLVLFSIFFIWW 418
>sp|Q8CNJ4|ATPD_STAES ATP synthase delta chain
          Length = 179

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = -1

Query: 642 SKKANSIFQFVL*RYKNKRQQE*NRTKNIKEILHISITENVFCQIQILITKHY 484
           S  AN   +FV   Y        N  K + +  HISI ENVF   Q L  K+Y
Sbjct: 51  SLTANQREEFVERVYNEANPYVVNTLKVLADNRHISIVENVFKSFQNLYNKYY 103
>sp|P15583|NU5M_LEITA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 101

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +1

Query: 505 LDLAEYVFGDGYMQYFFNIFCAILFLLSFVFISSQ-----YKLKYGICF 636
           +D+ ++    G + YFFNI C + F   F+FI+       +   Y ICF
Sbjct: 20  IDIIKFYILSGVIFYFFNIDCIMFFWRVFLFITMGFLFFIFTTWYFICF 68
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,813,032
Number of Sequences: 369166
Number of extensions: 1940976
Number of successful extensions: 4861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4855
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)