Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_I14
(804 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2... 33 0.91
sp|P24882|COX2_ASCSU Cytochrome c oxidase subunit 2 (Cytoch... 32 1.6
sp|Q8N0U8|VKORL_HUMAN Vitamin K epoxide reductase complex s... 31 3.5
sp|O51309|Y331_BORBU Hypothetical protein BB0331 31 3.5
sp|P24884|NU5M_ASCSU NADH-ubiquinone oxidoreductase chain 5... 30 5.9
sp|Q8CNJ4|ATPD_STAES ATP synthase delta chain 30 7.7
sp|P15583|NU5M_LEITA NADH-ubiquinone oxidoreductase chain 5... 30 7.7
>sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 567
Score = 33.1 bits (74), Expect = 0.91
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Frame = +1
Query: 355 LILSSHLIGYSCLKRFQSSNKNGL------ISYLGQCLLGIYALCSCHNIMFS------N 498
+I SS + + SSNK G I +G ++ +Y+L +I S N
Sbjct: 10 IIYSSIINNIDTINLLSSSNKIGWKLQNYNIIRIGIIII-LYSLYIFKDISLSYIFNNYN 68
Query: 499 QNLDLAEYVFGDGYMQYFFNIFCAILFLLSFVFIS 603
N DL Y+F D Y FNI+ I+FLL V IS
Sbjct: 69 NNNDLNIYIFNDLYKLNIFNIY--IIFLLLIVIIS 101
>sp|P24882|COX2_ASCSU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 232
Score = 32.3 bits (72), Expect = 1.6
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Frame = +1
Query: 481 NIMFSNQNLDLAEYVFGDGYMQYFFNIFCAILF--------------LLSFVFISSQYKL 618
N F + NL + +F YM +F+N C++LF L SF F S + +
Sbjct: 2 NNFFQDFNLLFSSSLFSS-YMDWFYNFNCSLLFGVLSFVSTMFVYLLLSSFYFKSKKIEY 60
Query: 619 KYGICFLGMATAILLV---ISDLNFRFWHGRLGCD 714
++G + ++LV + L+ +++G + D
Sbjct: 61 QFGELLCSVFPTLILVMQMVPSLSLLYYYGLMNLD 95
>sp|Q8N0U8|VKORL_HUMAN Vitamin K epoxide reductase complex subunit 1-like protein 1
(VKORC1-like protein 1)
Length = 176
Score = 31.2 bits (69), Expect = 3.5
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 403 QSSNKNGLISYLGQCLLGIYALCSCHNIMFSNQNLDLAEYVFGDGYMQYF----FNIFCA 570
Q ++ GLI Y+ Q LLG+ A I+ ++ + + ++ Y+ YF F I C
Sbjct: 85 QPNSVFGLIFYILQLLLGMTASAVAALILMTSSIMSVVGSLY-LAYILYFVLKEFCIICI 143
Query: 571 ILFLLSFVFISSQYK 615
+ ++L+F+ + YK
Sbjct: 144 VTYVLNFLLLIINYK 158
>sp|O51309|Y331_BORBU Hypothetical protein BB0331
Length = 51
Score = 31.2 bits (69), Expect = 3.5
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 207 LFTKRFFVTLCYFVCSFSIFIRKLFRGTSI*KLAYSKSSYKILWLCRVFLDIIISSYRLF 386
+F K +F+ L +++ +S+ +R++F LC++ III SY LF
Sbjct: 5 IFNKMYFLFLIFYLKFYSLDLRRIF-------------------LCKILSKIIIESYTLF 45
Query: 387 VF 392
++
Sbjct: 46 MY 47
>sp|P24884|NU5M_ASCSU NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 547
Score = 30.4 bits (67), Expect = 5.9
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Frame = +1
Query: 349 SFLILSSHLIGYSCL----------KRFQSSNKN----GLISYLGQCLLGIYALCSCHNI 486
SF+ L SH + SCL Q +N G + Y Q L + C C +
Sbjct: 279 SFIHLLSHALFKSCLFMQVGYLIHCSLGQQDGRNYSNLGNVPYFIQLQLLVTLFCLC-GL 337
Query: 487 MFSNQNLDLAEYVFGDGYMQYFFNIFCAILFLLSFVFISSQYKLKYG---------ICFL 639
+FS+ + +Y+ + +F +F + F F+ Y+L G CF
Sbjct: 338 VFSSGAVS-KDYILEFFFSNFFMVVFACMFFFSVFLTFGYSYRLWKGFFMSFSRPVFCFS 396
Query: 640 GMAT----AILLVISDLNFRFW 693
++LLV+ + F +W
Sbjct: 397 SSVVMNFLSLLLVLFSIFFIWW 418
>sp|Q8CNJ4|ATPD_STAES ATP synthase delta chain
Length = 179
Score = 30.0 bits (66), Expect = 7.7
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = -1
Query: 642 SKKANSIFQFVL*RYKNKRQQE*NRTKNIKEILHISITENVFCQIQILITKHY 484
S AN +FV Y N K + + HISI ENVF Q L K+Y
Sbjct: 51 SLTANQREEFVERVYNEANPYVVNTLKVLADNRHISIVENVFKSFQNLYNKYY 103
>sp|P15583|NU5M_LEITA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 101
Score = 30.0 bits (66), Expect = 7.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 505 LDLAEYVFGDGYMQYFFNIFCAILFLLSFVFISSQ-----YKLKYGICF 636
+D+ ++ G + YFFNI C + F F+FI+ + Y ICF
Sbjct: 20 IDIIKFYILSGVIFYFFNIDCIMFFWRVFLFITMGFLFFIFTTWYFICF 68
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,813,032
Number of Sequences: 369166
Number of extensions: 1940976
Number of successful extensions: 4861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4855
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)