Planaria EST Database


DrC_01457

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01457
         (834 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02630|NU116_YEAST  Nucleoporin NUP116/NSP116 (Nuclear po...    59   2e-08
sp|P48837|NUP57_YEAST  Nucleoporin NUP57 (Nuclear pore prote...    57   6e-08
sp|Q02629|NU100_YEAST  Nucleoporin NUP100/NSP100 (Nuclear po...    57   6e-08
sp|P14907|NSP1_YEAST  Nucleoporin NSP1 (Nuclear pore protein...    55   2e-07
sp|Q02199|NUP49_YEAST  Nucleoporin NUP49/NSP49 (Nuclear pore...    50   8e-06
sp|P49687|NU145_YEAST  Nucleoporin NUP145 precursor (Nuclear...    47   6e-05
sp|P49793|NUP98_RAT  Nuclear pore complex protein Nup98 (Nuc...    45   2e-04
sp|P52948|NUP98_HUMAN  Nuclear pore complex protein Nup98-Nu...    44   4e-04
sp|Q9UTK4|NU189_SCHPO  Nucleoporin nup189 (Nuclear pore prot...    44   7e-04
sp|Q09793|NG79_SCHPO  Putative nucleoporin C22G7.09c               41   0.005
>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 (Nuclear pore protein NUP116/NSP116)
          Length = 1113

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 60/207 (28%), Positives = 83/207 (40%), Gaps = 12/207 (5%)
 Frame = +3

Query: 3    DNQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGS 182
            +NQ+ +   G     N+    P G   L   Q  NS+FG +PT   N S+ F+ S T  S
Sbjct: 488  NNQSQSQPGGLFGQTNQNNNQPFGQNGLQQPQQNNSLFGAKPTGFGNTSL-FSNSTTNQS 546

Query: 183  LFSSA----APSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDK--------STNKDS 326
               S       S  LF NK QP    G +  +  S   G  LFG+         ++    
Sbjct: 547  NGISGNNLQQQSGGLFQNKQQPAS--GGLFGSKPSNTVGGGLFGNNQVANQNNPASTSGG 604

Query: 327  LFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSS 506
            LFG+K     LFG  + T  ++   GIFG N       N+ N +             +S+
Sbjct: 605  LFGSKPATGSLFGGTNSTAPNASSGGIFGSN-------NASNTAATT----------NST 647

Query: 507  NLFGVKPDGTDQSNKPLFSFTSAVNSN 587
             LFG KP G   S      F +  NS+
Sbjct: 648  GLFGNKPVGAGASTSAGGLFGNNNNSS 674

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 59/209 (28%), Positives = 80/209 (38%), Gaps = 45/209 (21%)
 Frame = +3

Query: 96  QGTNSIFGKQPTN--IFNNSVD-----FNKSPTG---------------GSLFSSAAPSN 209
           QGT ++FG +P +  +F  S        N +PTG               G LF     SN
Sbjct: 345 QGTGALFGAKPASGGLFGQSAGSKAFGMNTNPTGTTGGLFGQTNQQQSGGGLFGQQQNSN 404

Query: 210 T--LFGNKAQPNKLFGDISDTTKSAAPGNT-----LFGDKSTNKDSLFGNK--------- 341
              LFG   Q     G       S A G       LFG K      LFG +         
Sbjct: 405 AGGLFGQNNQSQNQSGLFGQQNSSNAFGQPQQQGGLFGSKPAG--GLFGQQQGASTFASG 462

Query: 342 -AQPNKLFGDISDTPKSSGGQGIFG-----LNAQKCNLFNSLNESIKNETKLDNVNKESS 503
            AQ N +FG  +   +S+G  G+FG       +Q   LF   N++       + + +   
Sbjct: 463 NAQNNSIFGQNNQQQQSTG--GLFGQQNNQSQSQPGGLFGQTNQNNNQPFGQNGLQQPQQ 520

Query: 504 SN-LFGVKPDGTDQSNKPLFSFTSAVNSN 587
           +N LFG KP G    N  LFS ++   SN
Sbjct: 521 NNSLFGAKPTGF--GNTSLFSNSTTNQSN 547
>sp|P48837|NUP57_YEAST Nucleoporin NUP57 (Nuclear pore protein NUP57)
          Length = 541

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 56/190 (29%), Positives = 75/190 (39%), Gaps = 4/190 (2%)
 Frame = +3

Query: 3   DNQNVN---SVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPT 173
           +N N N   S SGF    ++P           +NQ TN+    Q ++       F   P 
Sbjct: 26  NNNNTNTQPSASGFGFGGSQPNSGTATTGGFGANQATNTFGSNQQSSTGGGL--FGNKPA 83

Query: 174 GGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDK-STNKDSLFGNKAQP 350
            GSL SS   S T  G  A    LFG  +   + +  G  LFG+K +T    LFGN AQ 
Sbjct: 84  LGSLGSS---STTASGTTATGTGLFGQQTAQPQQSTIGGGLFGNKPTTTTGGLFGNSAQN 140

Query: 351 NKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPD 530
           N           S+   G+FG      N   S   S+       N +  ++  LFG KP 
Sbjct: 141 N-----------STTSGGLFG------NKVGSTG-SLMGGNSTQNTSNMNAGGLFGAKPQ 182

Query: 531 GTDQSNKPLF 560
            T  +   LF
Sbjct: 183 NTTATTGGLF 192

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 54/197 (27%), Positives = 78/197 (39%), Gaps = 30/197 (15%)
 Frame = +3

Query: 12  NVNSVSGFSLFPNKPVCSPLGVPNLSSNQGT---NSIFGKQPTNIFNNSVDFNKSPTGGS 182
           N  S +G  LF NKP    LG  + +++  T     +FG+Q       +    +S  GG 
Sbjct: 68  NQQSSTGGGLFGNKPALGSLGSSSTTASGTTATGTGLFGQQ-------TAQPQQSTIGGG 120

Query: 183 LFSSAAPSNT--LFGNKAQPNK-----LFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNK 341
           LF +   + T  LFGN AQ N      LFG+   +T S   GN+     + N   LFG K
Sbjct: 121 LFGNKPTTTTGGLFGNSAQNNSTTSGGLFGNKVGSTGSLMGGNSTQNTSNMNAGGLFGAK 180

Query: 342 AQPNK-------------------LFGDISDTPKSSGGQGIFGLNAQ-KCNLFNSLNESI 461
            Q                      LFG  +    + GG G+FG + Q + N    L  ++
Sbjct: 181 PQNTTATTGGLFGSKPQGSTTNGGLFGSGTQNNNTLGGGGLFGQSQQPQTNTAPGLGNTV 240

Query: 462 KNETKLDNVNKESSSNL 512
             +         + SNL
Sbjct: 241 STQPSFAWSKPSTGSNL 257
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear pore protein NUP100/NSP100)
          Length = 959

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
 Frame = +3

Query: 6   NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIF---NNSVDFNKSPTG 176
           +QN NS    SLF  +   +     N  S+ GT        +NIF   NNS    +S T 
Sbjct: 147 SQNNNSAGTSSLFGGQSTSTTGTFGNTGSSFGTG--LNGNGSNIFGAGNNS----QSNTT 200

Query: 177 GSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAP-----GNTLFGDKSTNKDSLFGNK 341
           GSLF +   S   FG   Q   LFG  S  T +A       G + FG K     SLFG  
Sbjct: 201 GSLFGNQQSS--AFGTNNQQGSLFGQQSQNTNNAFGNQNQLGGSSFGSKPVGSGSLFGQS 258

Query: 342 AQP--------NKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESI--KNETKLDNVN 491
                      N LFG ++ + + S   G+FG N+      NS  + +  +N  ++  +N
Sbjct: 259 NNTLGNTTNNRNGLFGQMNSSNQGSSNSGLFGQNS-----MNSSTQGVFGQNNNQM-QIN 312

Query: 492 KESSSNLFGVKPDGTDQSNKPLF 560
             ++++LFG     ++ ++  LF
Sbjct: 313 GNNNNSLFGKANTFSNSASGGLF 335

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 12/207 (5%)
 Frame = +3

Query: 6    NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTN----IFNNSVDFNKSPT 173
            +Q  NS+ G +   N P     G P  + +   NS+FG +P +    +F N+      P+
Sbjct: 431  SQQGNSLFGATKLTNMPFG---GNPTANQSGSGNSLFGTKPASTTGSLFGNNTASTTVPS 487

Query: 174  GGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSL------FG 335
               LF + A ++T   N      LFG   D+    A G  LFG+ ++N  ++      FG
Sbjct: 488  TNGLFGNNANNSTSTTNTG----LFGAKPDSQSKPALGGGLFGNSNSNSSTIGQNKPVFG 543

Query: 336  NKAQPNKLFGDISDTPKSSGGQG-IFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNL 512
               Q   LFG       + G  G +FG N       N+LN   +N   ++N  + +    
Sbjct: 544  GTTQNTGLFGATGTNSSAVGSTGKLFGQNN------NTLNVGTQNVPPVNNTTQNALLGT 597

Query: 513  FGVKP-DGTDQSNKPLFSFTSAVNSNT 590
              V        +N+ LFS  S  NS T
Sbjct: 598  TAVPSLQQAPVTNEQLFSKISIPNSIT 624

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 66/216 (30%), Positives = 91/216 (42%), Gaps = 24/216 (11%)
 Frame = +3

Query: 6   NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSI--------FGKQPTNIFNNSVD-- 155
           N N  +   F         SP G  N S+    N+         FG    N FNN+ +  
Sbjct: 70  NNNTQNNGAFGQSMGATQNSPFGSLNSSNASNGNTFGGSSSMGSFGGNTNNAFNNNSNST 129

Query: 156 -----FNKSPTGGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNT--LFG-DKS 311
                FNK  TGG+LF S         N A  + LFG  S T+ +   GNT   FG   +
Sbjct: 130 NSPFGFNKPNTGGTLFGSQN------NNSAGTSSLFGGQS-TSTTGTFGNTGSSFGTGLN 182

Query: 312 TNKDSLF--GNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDN 485
            N  ++F  GN +Q N   G +    +SS     FG N Q+ +LF   +++  N     N
Sbjct: 183 GNGSNIFGAGNNSQSNTT-GSLFGNQQSSA----FGTNNQQGSLFGQQSQNTNN--AFGN 235

Query: 486 VNKESSSNLFGVKPDGT----DQSNKPLFSFTSAVN 581
            N+   S+ FG KP G+     QSN  L + T+  N
Sbjct: 236 QNQLGGSS-FGSKPVGSGSLFGQSNNTLGNTTNNRN 270

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 84/305 (27%), Positives = 114/305 (37%), Gaps = 73/305 (23%)
 Frame = +3

Query: 6    NQNVNSVSGFSLF-PNKPVCSPLGVPNLSSNQ------GTNSIFGKQPTNIFNNSVDF-- 158
            N +    S   LF  N    S  GV   ++NQ        NS+FGK   N F+NS     
Sbjct: 277  NSSNQGSSNSGLFGQNSMNSSTQGVFGQNNNQMQINGNNNNSLFGK--ANTFSNSASGGL 334

Query: 159  ---NKSPTGGSLF---SSAAPSNTLFG--NKAQPNK---------LFGDISDT------- 266
               N    G  LF   S  + S+ LFG  N+ QPN          LFG  ++        
Sbjct: 335  FGQNNQQQGSGLFGQNSQTSGSSGLFGQNNQKQPNTFTQSNTGIGLFGQNNNQQQQSTGL 394

Query: 267  --TKSAAPGNTLFG-DKSTNKDSLFG---------NKAQPNKLFG--DISDTP------- 383
               K A    +LFG + ST  +SLFG            Q N LFG   +++ P       
Sbjct: 395  FGAKPAGTTGSLFGGNSSTQPNSLFGTTNVPTSNTQSQQGNSLFGATKLTNMPFGGNPTA 454

Query: 384  -KSSGGQGIFGLNAQKC--NLF--NSLNESIKNETKL--DNVNKESS---SNLFGVKPDG 533
             +S  G  +FG        +LF  N+ + ++ +   L  +N N  +S   + LFG KP  
Sbjct: 455  NQSGSGNSLFGTKPASTTGSLFGNNTASTTVPSTNGLFGNNANNSTSTTNTGLFGAKP-- 512

Query: 534  TDQSNKPLF---------SFTSAVNSNTPXXXXXXXXXXXXXXXALNSEATWQGGSKLFA 686
             D  +KP           S +S +  N P                 NS A    G KLF 
Sbjct: 513  -DSQSKPALGGGLFGNSNSNSSTIGQNKPVFGGTTQNTGLFGATGTNSSAVGSTG-KLFG 570

Query: 687  SKLNT 701
               NT
Sbjct: 571  QNNNT 575

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
 Frame = +3

Query: 48  NKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNTLFGNK 227
           N+P+    G  NLS    T+S  G+Q             S    SLF ++  +N    N 
Sbjct: 5   NRPM---FGGSNLSFGSNTSSFGGQQ-------------SQQPNSLFGNSNNNNNSTSNN 48

Query: 228 AQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNK--AQPNKLFGDISDTPKSSG-- 395
           AQ    FG    T+ + +  N+LFG+ +T  +  FG    A  N  FG ++ +  S+G  
Sbjct: 49  AQSG--FGGF--TSAAGSNSNSLFGNNNTQNNGAFGQSMGATQNSPFGSLNSSNASNGNT 104

Query: 396 -----GQGIFGLNAQKCNLFNSLNESIKNETKLD------------NVNKESSSNLFGVK 524
                  G FG N    N FN+ + S  +    +            N N   +S+LFG +
Sbjct: 105 FGGSSSMGSFGGNTN--NAFNNNSNSTNSPFGFNKPNTGGTLFGSQNNNSAGTSSLFGGQ 162

Query: 525 PDGTDQS-NKPLFSFTSAVNSN 587
              T  +      SF + +N N
Sbjct: 163 STSTTGTFGNTGSSFGTGLNGN 184
>sp|P14907|NSP1_YEAST Nucleoporin NSP1 (Nuclear pore protein NSP1) (Nucleoskeletal-like
           protein) (p110)
          Length = 823

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
 Frame = +3

Query: 81  NLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSL---FSSAAPSNTLFGNKAQPNKLFG 251
           N +S+ G  +    Q T  FNNS   N +    S+   F S    NT FGN    + +FG
Sbjct: 26  NQNSSTGAGAFGTGQSTFGFNNSAPNNTNNANSSITPAFGSNNTGNTAFGNSNPTSNVFG 85

Query: 252 DISDTTK---SAAPGNTLFGDKSTNKD----SLFGNKAQPNKLFGDISD---TPKSSGGQ 401
             + TT    S + G +LFG  S  +     +  GN    + LF + ++   T  + GG 
Sbjct: 86  SNNSTTNTFGSNSAGTSLFGSSSAQQTKSNGTAGGNTFGSSSLFNNSTNSNTTKPAFGGL 145

Query: 402 GIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGTDQSNKPLFSFTSAVN 581
              G N    +   + N S        N NK + S       D   + +KP FSF S+V 
Sbjct: 146 NFGGGNNTTPSSTGNANTSNNLFGATANANKPAFSFGATTNDDKKTEPDKPAFSFNSSVG 205

Query: 582 SNT 590
           + T
Sbjct: 206 NKT 208

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 5/160 (3%)
 Frame = +3

Query: 123 QPTNIFNNSVDFN---KSPTGGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNT 293
           +P   FN+SV      ++PT G  F S    N      A+P+  FG  S     A P   
Sbjct: 195 KPAFSFNSSVGNKTDAQAPTTGFSFGSQLGGNKTVNEAAKPSLSFGSGS---AGANPAGA 251

Query: 294 LFGDKSTNKDSLFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNET 473
              + +TN+       A+P   FG  +   K++     F   A+             +E 
Sbjct: 252 SQPEPTTNE------PAKPALSFGTATSDNKTTNTTPSFSFGAK------------SDEN 293

Query: 474 KLDNVNKESSSNLFGVKPD--GTDQSNKPLFSFTSAVNSN 587
           K    +K + S  FG KP+    D S+KP FSF +  N +
Sbjct: 294 KAGATSKPAFS--FGAKPEEKKDDNSSKPAFSFGAKSNED 331

 Score = 34.3 bits (77), Expect = 0.43
 Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 8/189 (4%)
 Frame = +3

Query: 45  PNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKS-PTGGSLFS-SAAPSNTLF 218
           P KP  S  G    S N+ TN+     P+  F    D NK+  T    FS  A P     
Sbjct: 261 PAKPALS-FGTAT-SDNKTTNTT----PSFSFGAKSDENKAGATSKPAFSFGAKPEEKKD 314

Query: 219 GNKAQPNKLFGDISDTTK---SAAPGNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKS 389
            N ++P   FG  S+  K   +A P  + FG K   K++     ++P   FG  SD  K 
Sbjct: 315 DNSSKPAFSFGAKSNEDKQDGTAKPAFS-FGAKPAEKNN--NETSKPAFSFGAKSDEKKD 371

Query: 390 S-GGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGT--DQSNKPLF 560
               +  F   A+             +E K    +K + S  FG KP+    D S+KP F
Sbjct: 372 GDASKPAFSFGAKP------------DENKASATSKPAFS--FGAKPEEKKDDNSSKPAF 417

Query: 561 SFTSAVNSN 587
           SF +  N +
Sbjct: 418 SFGAKSNED 426
>sp|Q02199|NUP49_YEAST Nucleoporin NUP49/NSP49 (Nuclear pore protein NUP49/NSP49)
          Length = 472

 Score = 50.1 bits (118), Expect = 8e-06
 Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 31/185 (16%)
 Frame = +3

Query: 18  NSVSGFSLFPNKP-----VCSPLGVPNLSSNQGT----------NSIFGKQPTNIFNNSV 152
           ++ +G  LF NKP         L   N +SN G+            +FG   TN  NNS 
Sbjct: 80  SATTGGGLFGNKPNNTANTGGGLFGANSNSNSGSLFGSNNAQTSRGLFGNNNTNNINNSS 139

Query: 153 D---------FNKSPTGG-SLF----SSAAPSNT--LFGNKAQPNKLFGDISDTTKSAAP 284
                     F   P GG SLF    +S+AP+    +FG K     LFG+ +  T +   
Sbjct: 140 SGMNNASAGLFGSKPAGGTSLFGNTSTSSAPAQNQGMFGAKPAGTSLFGNNAGNTTT--- 196

Query: 285 GNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIK 464
           G  LFG K T   SLFG+    N    + S+   S+ G G+FG   Q+      +  +++
Sbjct: 197 GGGLFGSKPTGATSLFGSSNNNNN--NNNSNNIMSASG-GLFGNQQQQLQQQPQMQCALQ 253

Query: 465 NETKL 479
           N ++L
Sbjct: 254 NLSQL 258
>sp|P49687|NU145_YEAST Nucleoporin NUP145 precursor (Nuclear pore protein NUP145)
           [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin
           NUP145C (C-NUP145)]
          Length = 1317

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 66/266 (24%), Positives = 103/266 (38%), Gaps = 30/266 (11%)
 Frame = +3

Query: 6   NQNVNSVS----GFSLFPNKPVCSP---LGVPNLSSNQGTNSIFGKQ--------PTNIF 140
           N N NS+S      SLF NKP        G  N ++++   S+FG           T +F
Sbjct: 63  NSNANSISQQPANNSLFGNKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLF 122

Query: 141 NNSVDFNKSPTGGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNK 320
           + S +   S   G LF ++  +N    +  Q   LFG    TT  A  G       STN 
Sbjct: 123 SGSNNIASSTQNGGLFGNS--NNNNITSTTQNGGLFG--KPTTTPAGAGGLFGNSSSTNS 178

Query: 321 DS-LFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVN-- 491
            + LFG+    +   G     P +S   G+FG N            ++       N++  
Sbjct: 179 TTGLFGSNNTQSST-GIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNV 237

Query: 492 --------KESSSNLFGV--KPDGTDQ--SNKPLFSFTSAVNSNTPXXXXXXXXXXXXXX 635
                   +  +S+L  V  K D   +   N+  +SF+S+V+ N P              
Sbjct: 238 PMAVADMPRSITSSLSDVNGKSDAEPKPIENRRTYSFSSSVSGNAP------------LP 285

Query: 636 XALNSEATWQGGSKLFASKLNTSENE 713
            A  S    +  ++L A++ +TS NE
Sbjct: 286 LASQSSLVSRLSTRLKATQKSTSPNE 311

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
 Frame = +3

Query: 183 LFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTL-FGDKSTNKDSLFGN-KAQPNK 356
           +F+ +  S   FGN+          + T+  A P ++L F  KST    LFGN     N 
Sbjct: 1   MFNKSVNSGFTFGNQ-------NTSTPTSTPAQPSSSLQFPQKSTG---LFGNVNVNAN- 49

Query: 357 LFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGT 536
                + TP  SGG  +F  N+      NS+++   N +   N   + S  LFG   + T
Sbjct: 50  -----TSTPSPSGG--LFNANSNA----NSISQQPANNSLFGNKPAQPSGGLFGATNNTT 98

Query: 537 DQSNKPLFSFTSAVNSNT 590
            +S   LF   +A  ++T
Sbjct: 99  SKSAGSLFGNNNATANST 116
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa
           nucleoporin)
          Length = 937

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
 Frame = +3

Query: 39  LFPNKPVCSPLGVPNLSSNQGTNSIF--GKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNT 212
           LF + P  S      L S+  TNS F  G+  T    ++  F  +P GG        + +
Sbjct: 226 LFGSSPATS--SATGLFSSSTTNSAFSYGQNKTAFGTSTTGFGTNP-GGLFGQQNQQTTS 282

Query: 213 LFGNKAQPNKLFGDISDTTKSAAP-GNT-LFGDKSTNKDSLFG--NKAQPNKLFGDISDT 380
           LF      +K FG  + T  +    GNT   G  STN   LFG    +QP  LFG  ++T
Sbjct: 283 LF------SKPFGQATTTPNTGFSFGNTSTLGQPSTNTMGLFGVTQASQPGGLFGTATNT 336

Query: 381 PKSSG---GQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSS---------NLFGVK 524
              +    G G+FG   Q    F ++  ++    KL      ++S          LFG K
Sbjct: 337 STGTAFGTGTGLFG---QPNTGFGAVGSTLFGNNKLTTFGTSTTSAPSFGTTSGGLFGNK 393

Query: 525 PDGTDQSNKPLFSFTSAVNSN 587
           P  T  +N    +F    N++
Sbjct: 394 PTLTLGTNTNTSNFGFGTNNS 414

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 8/165 (4%)
 Frame = +3

Query: 48  NKPVCSPLGVPN---LSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNTLF 218
           NK   +P G       +S  G N+ FG      F  S   + S TGG           LF
Sbjct: 3   NKSFGTPFGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSSNTGG-----------LF 51

Query: 219 GN-KAQPNKLFG--DISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNKLFGDISD--TP 383
           GN + +P  LFG   +S    S + G   FG  +   +SLFG       LF   ++    
Sbjct: 52  GNSQTKPGGLFGTSSLSQPATSTSTGFG-FGTSTGTSNSLFGTANTGTSLFSSQNNAFAQ 110

Query: 384 KSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFG 518
               G G FG +     LF + N +        N    +S +LFG
Sbjct: 111 NKPTGFGNFGTSTSSGGLFGTTNTT-------SNPFGNTSGSLFG 148
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 precursor [Contains:
           Nuclear pore complex protein Nup98 (Nucleoporin Nup98)
           (98 kDa nucleoporin); Nuclear pore complex protein Nup96
           (Nucleoporin Nup96) (96 kDa nucleoporin)]
          Length = 1729

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
 Frame = +3

Query: 39  LFPNKPVCSPLGVPNLSSNQGTNSIF--GKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNT 212
           LF + P  S      L S+  TNS F  G+  T    ++  F  +P GG        + +
Sbjct: 227 LFGSSPATS--SATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNP-GGLFGQQNQQTTS 283

Query: 213 LFGNKAQPNKLFGDISDTTKSAAP-GNT-LFGDKSTNKDSLFG--NKAQPNKLFGDISDT 380
           LF      +K FG  + T  +    GNT   G  STN   LFG    +QP  LFG  ++T
Sbjct: 284 LF------SKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNT 337

Query: 381 PKSSG---GQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSS---------NLFGVK 524
              +    G G+FG   Q    F ++  ++    KL      ++S          LFG K
Sbjct: 338 STGTAFGTGTGLFG---QTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFGNK 394

Query: 525 PDGTDQSNKPLFSFTSAVNSN 587
           P  T  +N    +F    N++
Sbjct: 395 PTLTLGTNTNTSNFGFGTNTS 415

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 42/144 (29%), Positives = 54/144 (37%), Gaps = 19/144 (13%)
 Frame = +3

Query: 87  SSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNTLFGNKA--QP-------- 236
           +S  G N+ FG      F  S   + + TGG   +S      LFG  +  QP        
Sbjct: 20  TSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGF 79

Query: 237 ---------NKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKS 389
                    N LFG  S  T   +  N  F   + NK + FGN       FG    T  S
Sbjct: 80  GFGTSTGTANTLFGTASTGTSLFSSQNNAF---AQNKPTGFGN-------FG----TSTS 125

Query: 390 SGGQGIFGLNAQKCNLFNSLNESI 461
           SG  G+FG      N F S + S+
Sbjct: 126 SG--GLFGTTNTTSNPFGSTSGSL 147
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 (Nuclear pore protein nup189)
          Length = 1778

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
 Frame = +3

Query: 222 NKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQP-------NKLFGDISDT 380
           N  Q   LFG  S+T     PGNTLFG ++T+      N  QP         LFG+ ++T
Sbjct: 20  NNQQTGGLFGSNSNT-----PGNTLFGSQNTSTTGFGQNTTQPLFGSNTNGGLFGNRNNT 74

Query: 381 PKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGTDQSNKPLF 560
             ++GG G FG+++    +F   N      T  +N    S   LFG      + +    F
Sbjct: 75  -TTTGGTG-FGMSS-GTGMFGQSNTPAFGGT--NNATNPSGGGLFGSNTANNNANTGTSF 129

Query: 561 SFTSAVNS 584
           SF S   S
Sbjct: 130 SFGSNAGS 137

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 48/175 (27%), Positives = 64/175 (36%), Gaps = 8/175 (4%)
 Frame = +3

Query: 90  SNQGTNSIFGKQPTNIF-----NNSVDFNKSPTGGSLFSSAAPSNTLFG---NKAQPNKL 245
           SN       G   T +F     NN+ + N +PT  S F     SN  FG   N A     
Sbjct: 392 SNTNNQPNSGTMGTGLFGFGANNNTANNNTAPT--STFGGNNSSNFSFGANNNAATKPSG 449

Query: 246 FGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQ 425
           FG    TT + A G   FG  + N          P   FG  + T     G G+FG    
Sbjct: 450 FG-FGSTTTTPASGGFSFGQNANNA---------PKPAFGSTATTAPKPAGTGLFGGLGA 499

Query: 426 KCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGTDQSNKPLFSFTSAVNSNT 590
             N   + N +    +   N N  + SN+FG     T  +   LF  T   N+ +
Sbjct: 500 GANTNTATNATGTGGSLFGNAN-TAGSNMFGSANSSTPGTG--LFGSTQTNNATS 551

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 14/159 (8%)
 Frame = +3

Query: 141 NNSVDFNKSPTGGSLFSSA-APSNTLFG--NKAQPNK-LFGDISDTTKSAAPGNTLFGDK 308
           N +   N + TGGSLF +A    + +FG  N + P   LFG       ++  G  LFG  
Sbjct: 502 NTNTATNATGTGGSLFGNANTAGSNMFGSANSSTPGTGLFGSTQTNNATSNTGTGLFGSN 561

Query: 309 STNKDSLFGN-----KAQPNKLFGDISDTPKSSGGQGIFGLN-----AQKCNLFNSLNES 458
           + N  +  G+           LFG+ +    S+   G+FG +     AQ  N    L   
Sbjct: 562 NANTTNTGGSLFNKPSTTTGGLFGNTTAQQPSTTTSGLFGASNTNNQAQTSNFGTGLFGG 621

Query: 459 IKNETKLDNVNKESSSNLFGVKPDGTDQSNKPLFSFTSA 575
            +   +   +      N +G         N PLFS T++
Sbjct: 622 SQAGQQQQPLQASIDQNPYG---------NNPLFSSTTS 651

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 2/176 (1%)
 Frame = +3

Query: 6   NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSL 185
           N+N  + +G + F         G  N  +  GTN+        +F ++   N + TG S 
Sbjct: 70  NRNNTTTTGGTGFGMSSGTGMFGQSNTPAFGGTNNATNPSGGGLFGSNTANNNANTGTSF 129

Query: 186 FSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNKLFG 365
              +   +T FG++     LFG  S TT +        G  S+N +++ G    P  +  
Sbjct: 130 SFGSNAGSTGFGSQGTGGGLFG--SSTTPATTNAFGTSGFVSSNANAVNGTANPPYAVTS 187

Query: 366 DIS-DTPKSSGGQGIFGLNAQKCNLFNSLNESIKNE-TKLDNVNKESSSNLFGVKP 527
           +    T  +S  Q I  + A +   F  L     N+  +  N +  ++++ FG  P
Sbjct: 188 EKDPQTNGTSVFQSITCMPAYRSYSFEELRLQDYNQGRRFGNASSTNTTSAFGSTP 243

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
 Frame = +3

Query: 12  NVNSVSGFSLFPNKPVCSPLGVP---NLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGS 182
           N +S +  S F + P       P   NLS      + FG   T+   N+   +    GGS
Sbjct: 229 NASSTNTTSAFGSTPAFGASTTPFGQNLSGTTNNATPFG---TSNATNTTPGSGLFGGGS 285

Query: 183 LFSSAAPSNTLFGNKAQ--PNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNK 356
            F S   +NT FG+        LFG  ++TT + + G  LFG       S F  +     
Sbjct: 286 AFGSNT-TNTGFGSGTNNASGGLFGQNNNTTSTPSTG--LFGG------STFNQQKPAFS 336

Query: 357 LFGDISDTPKSSGGQGIFGLN 419
            FG  ++T  +  G G+FG N
Sbjct: 337 GFGSTTNTTNTGTGTGLFGSN 357

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 47/163 (28%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
 Frame = +3

Query: 159 NKSPTGGSLFSSA-APSNTLFG-----------NKAQP-------NKLFGDISDTTKSAA 281
           N   TGG   S++  P NTLFG           N  QP         LFG+ ++TT +  
Sbjct: 20  NNQQTGGLFGSNSNTPGNTLFGSQNTSTTGFGQNTTQPLFGSNTNGGLFGNRNNTTTT-- 77

Query: 282 PGNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESI 461
            G T FG  S     +FG    P   FG  ++    SGG G+FG N    N     + S 
Sbjct: 78  -GGTGFGMSSGT--GMFGQSNTP--AFGGTNNATNPSGG-GLFGSNTANNNANTGTSFSF 131

Query: 462 -KNETKLDNVNKESSSNLFGVKPDGTDQSNKPLFSFTSAVNSN 587
             N       ++ +   LFG     T  +    F  +  V+SN
Sbjct: 132 GSNAGSTGFGSQGTGGGLFG---SSTTPATTNAFGTSGFVSSN 171
>sp|Q09793|NG79_SCHPO Putative nucleoporin C22G7.09c
          Length = 425

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 48/183 (26%), Positives = 70/183 (38%), Gaps = 6/183 (3%)
 Frame = +3

Query: 6   NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSL 185
           NQN  + +G  LF +    +     N  +N   ++ FG      F  +    K  TGGSL
Sbjct: 17  NQNTGTSAGTGLFSSNTFGN-----NTQANTPASTGFGGVTGGAFGQT----KPQTGGSL 67

Query: 186 F------SSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQ 347
           F      +S  P   LFG   Q              AAPG +LFG  ST K    G    
Sbjct: 68  FGNKPNATSTTPGLNLFGQNPQ--------------AAPGGSLFG-ASTTKPQAPGGLFN 112

Query: 348 PNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKP 527
            N+     +    +    G+FGL+ Q             N+T+      +++++LFG   
Sbjct: 113 QNQTQAQPAQAAPTG---GLFGLSGQ-------------NQTQSQTQPAQANTSLFGQSN 156

Query: 528 DGT 536
            GT
Sbjct: 157 IGT 159
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,637,734
Number of Sequences: 369166
Number of extensions: 2108267
Number of successful extensions: 6132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6061
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)