Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_I03
(834 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 (Nuclear po... 59 2e-08
sp|P48837|NUP57_YEAST Nucleoporin NUP57 (Nuclear pore prote... 57 6e-08
sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear po... 57 6e-08
sp|P14907|NSP1_YEAST Nucleoporin NSP1 (Nuclear pore protein... 55 2e-07
sp|Q02199|NUP49_YEAST Nucleoporin NUP49/NSP49 (Nuclear pore... 50 8e-06
sp|P49687|NU145_YEAST Nucleoporin NUP145 precursor (Nuclear... 47 6e-05
sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98 (Nuc... 45 2e-04
sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nu... 44 4e-04
sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 (Nuclear pore prot... 44 7e-04
sp|Q09793|NG79_SCHPO Putative nucleoporin C22G7.09c 41 0.005
>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 (Nuclear pore protein NUP116/NSP116)
Length = 1113
Score = 58.5 bits (140), Expect = 2e-08
Identities = 60/207 (28%), Positives = 83/207 (40%), Gaps = 12/207 (5%)
Frame = +3
Query: 3 DNQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGS 182
+NQ+ + G N+ P G L Q NS+FG +PT N S+ F+ S T S
Sbjct: 488 NNQSQSQPGGLFGQTNQNNNQPFGQNGLQQPQQNNSLFGAKPTGFGNTSL-FSNSTTNQS 546
Query: 183 LFSSA----APSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDK--------STNKDS 326
S S LF NK QP G + + S G LFG+ ++
Sbjct: 547 NGISGNNLQQQSGGLFQNKQQPAS--GGLFGSKPSNTVGGGLFGNNQVANQNNPASTSGG 604
Query: 327 LFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSS 506
LFG+K LFG + T ++ GIFG N N+ N + +S+
Sbjct: 605 LFGSKPATGSLFGGTNSTAPNASSGGIFGSN-------NASNTAATT----------NST 647
Query: 507 NLFGVKPDGTDQSNKPLFSFTSAVNSN 587
LFG KP G S F + NS+
Sbjct: 648 GLFGNKPVGAGASTSAGGLFGNNNNSS 674
Score = 47.0 bits (110), Expect = 6e-05
Identities = 59/209 (28%), Positives = 80/209 (38%), Gaps = 45/209 (21%)
Frame = +3
Query: 96 QGTNSIFGKQPTN--IFNNSVD-----FNKSPTG---------------GSLFSSAAPSN 209
QGT ++FG +P + +F S N +PTG G LF SN
Sbjct: 345 QGTGALFGAKPASGGLFGQSAGSKAFGMNTNPTGTTGGLFGQTNQQQSGGGLFGQQQNSN 404
Query: 210 T--LFGNKAQPNKLFGDISDTTKSAAPGNT-----LFGDKSTNKDSLFGNK--------- 341
LFG Q G S A G LFG K LFG +
Sbjct: 405 AGGLFGQNNQSQNQSGLFGQQNSSNAFGQPQQQGGLFGSKPAG--GLFGQQQGASTFASG 462
Query: 342 -AQPNKLFGDISDTPKSSGGQGIFG-----LNAQKCNLFNSLNESIKNETKLDNVNKESS 503
AQ N +FG + +S+G G+FG +Q LF N++ + + +
Sbjct: 463 NAQNNSIFGQNNQQQQSTG--GLFGQQNNQSQSQPGGLFGQTNQNNNQPFGQNGLQQPQQ 520
Query: 504 SN-LFGVKPDGTDQSNKPLFSFTSAVNSN 587
+N LFG KP G N LFS ++ SN
Sbjct: 521 NNSLFGAKPTGF--GNTSLFSNSTTNQSN 547
>sp|P48837|NUP57_YEAST Nucleoporin NUP57 (Nuclear pore protein NUP57)
Length = 541
Score = 57.0 bits (136), Expect = 6e-08
Identities = 56/190 (29%), Positives = 75/190 (39%), Gaps = 4/190 (2%)
Frame = +3
Query: 3 DNQNVN---SVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPT 173
+N N N S SGF ++P +NQ TN+ Q ++ F P
Sbjct: 26 NNNNTNTQPSASGFGFGGSQPNSGTATTGGFGANQATNTFGSNQQSSTGGGL--FGNKPA 83
Query: 174 GGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDK-STNKDSLFGNKAQP 350
GSL SS S T G A LFG + + + G LFG+K +T LFGN AQ
Sbjct: 84 LGSLGSS---STTASGTTATGTGLFGQQTAQPQQSTIGGGLFGNKPTTTTGGLFGNSAQN 140
Query: 351 NKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPD 530
N S+ G+FG N S S+ N + ++ LFG KP
Sbjct: 141 N-----------STTSGGLFG------NKVGSTG-SLMGGNSTQNTSNMNAGGLFGAKPQ 182
Query: 531 GTDQSNKPLF 560
T + LF
Sbjct: 183 NTTATTGGLF 192
Score = 54.3 bits (129), Expect = 4e-07
Identities = 54/197 (27%), Positives = 78/197 (39%), Gaps = 30/197 (15%)
Frame = +3
Query: 12 NVNSVSGFSLFPNKPVCSPLGVPNLSSNQGT---NSIFGKQPTNIFNNSVDFNKSPTGGS 182
N S +G LF NKP LG + +++ T +FG+Q + +S GG
Sbjct: 68 NQQSSTGGGLFGNKPALGSLGSSSTTASGTTATGTGLFGQQ-------TAQPQQSTIGGG 120
Query: 183 LFSSAAPSNT--LFGNKAQPNK-----LFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNK 341
LF + + T LFGN AQ N LFG+ +T S GN+ + N LFG K
Sbjct: 121 LFGNKPTTTTGGLFGNSAQNNSTTSGGLFGNKVGSTGSLMGGNSTQNTSNMNAGGLFGAK 180
Query: 342 AQPNK-------------------LFGDISDTPKSSGGQGIFGLNAQ-KCNLFNSLNESI 461
Q LFG + + GG G+FG + Q + N L ++
Sbjct: 181 PQNTTATTGGLFGSKPQGSTTNGGLFGSGTQNNNTLGGGGLFGQSQQPQTNTAPGLGNTV 240
Query: 462 KNETKLDNVNKESSSNL 512
+ + SNL
Sbjct: 241 STQPSFAWSKPSTGSNL 257
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear pore protein NUP100/NSP100)
Length = 959
Score = 57.0 bits (136), Expect = 6e-08
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Frame = +3
Query: 6 NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIF---NNSVDFNKSPTG 176
+QN NS SLF + + N S+ GT +NIF NNS +S T
Sbjct: 147 SQNNNSAGTSSLFGGQSTSTTGTFGNTGSSFGTG--LNGNGSNIFGAGNNS----QSNTT 200
Query: 177 GSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAP-----GNTLFGDKSTNKDSLFGNK 341
GSLF + S FG Q LFG S T +A G + FG K SLFG
Sbjct: 201 GSLFGNQQSS--AFGTNNQQGSLFGQQSQNTNNAFGNQNQLGGSSFGSKPVGSGSLFGQS 258
Query: 342 AQP--------NKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESI--KNETKLDNVN 491
N LFG ++ + + S G+FG N+ NS + + +N ++ +N
Sbjct: 259 NNTLGNTTNNRNGLFGQMNSSNQGSSNSGLFGQNS-----MNSSTQGVFGQNNNQM-QIN 312
Query: 492 KESSSNLFGVKPDGTDQSNKPLF 560
++++LFG ++ ++ LF
Sbjct: 313 GNNNNSLFGKANTFSNSASGGLF 335
Score = 56.2 bits (134), Expect = 1e-07
Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 12/207 (5%)
Frame = +3
Query: 6 NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTN----IFNNSVDFNKSPT 173
+Q NS+ G + N P G P + + NS+FG +P + +F N+ P+
Sbjct: 431 SQQGNSLFGATKLTNMPFG---GNPTANQSGSGNSLFGTKPASTTGSLFGNNTASTTVPS 487
Query: 174 GGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSL------FG 335
LF + A ++T N LFG D+ A G LFG+ ++N ++ FG
Sbjct: 488 TNGLFGNNANNSTSTTNTG----LFGAKPDSQSKPALGGGLFGNSNSNSSTIGQNKPVFG 543
Query: 336 NKAQPNKLFGDISDTPKSSGGQG-IFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNL 512
Q LFG + G G +FG N N+LN +N ++N + +
Sbjct: 544 GTTQNTGLFGATGTNSSAVGSTGKLFGQNN------NTLNVGTQNVPPVNNTTQNALLGT 597
Query: 513 FGVKP-DGTDQSNKPLFSFTSAVNSNT 590
V +N+ LFS S NS T
Sbjct: 598 TAVPSLQQAPVTNEQLFSKISIPNSIT 624
Score = 50.8 bits (120), Expect = 4e-06
Identities = 66/216 (30%), Positives = 91/216 (42%), Gaps = 24/216 (11%)
Frame = +3
Query: 6 NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSI--------FGKQPTNIFNNSVD-- 155
N N + F SP G N S+ N+ FG N FNN+ +
Sbjct: 70 NNNTQNNGAFGQSMGATQNSPFGSLNSSNASNGNTFGGSSSMGSFGGNTNNAFNNNSNST 129
Query: 156 -----FNKSPTGGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNT--LFG-DKS 311
FNK TGG+LF S N A + LFG S T+ + GNT FG +
Sbjct: 130 NSPFGFNKPNTGGTLFGSQN------NNSAGTSSLFGGQS-TSTTGTFGNTGSSFGTGLN 182
Query: 312 TNKDSLF--GNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDN 485
N ++F GN +Q N G + +SS FG N Q+ +LF +++ N N
Sbjct: 183 GNGSNIFGAGNNSQSNTT-GSLFGNQQSSA----FGTNNQQGSLFGQQSQNTNN--AFGN 235
Query: 486 VNKESSSNLFGVKPDGT----DQSNKPLFSFTSAVN 581
N+ S+ FG KP G+ QSN L + T+ N
Sbjct: 236 QNQLGGSS-FGSKPVGSGSLFGQSNNTLGNTTNNRN 270
Score = 45.8 bits (107), Expect = 1e-04
Identities = 84/305 (27%), Positives = 114/305 (37%), Gaps = 73/305 (23%)
Frame = +3
Query: 6 NQNVNSVSGFSLF-PNKPVCSPLGVPNLSSNQ------GTNSIFGKQPTNIFNNSVDF-- 158
N + S LF N S GV ++NQ NS+FGK N F+NS
Sbjct: 277 NSSNQGSSNSGLFGQNSMNSSTQGVFGQNNNQMQINGNNNNSLFGK--ANTFSNSASGGL 334
Query: 159 ---NKSPTGGSLF---SSAAPSNTLFG--NKAQPNK---------LFGDISDT------- 266
N G LF S + S+ LFG N+ QPN LFG ++
Sbjct: 335 FGQNNQQQGSGLFGQNSQTSGSSGLFGQNNQKQPNTFTQSNTGIGLFGQNNNQQQQSTGL 394
Query: 267 --TKSAAPGNTLFG-DKSTNKDSLFG---------NKAQPNKLFG--DISDTP------- 383
K A +LFG + ST +SLFG Q N LFG +++ P
Sbjct: 395 FGAKPAGTTGSLFGGNSSTQPNSLFGTTNVPTSNTQSQQGNSLFGATKLTNMPFGGNPTA 454
Query: 384 -KSSGGQGIFGLNAQKC--NLF--NSLNESIKNETKL--DNVNKESS---SNLFGVKPDG 533
+S G +FG +LF N+ + ++ + L +N N +S + LFG KP
Sbjct: 455 NQSGSGNSLFGTKPASTTGSLFGNNTASTTVPSTNGLFGNNANNSTSTTNTGLFGAKP-- 512
Query: 534 TDQSNKPLF---------SFTSAVNSNTPXXXXXXXXXXXXXXXALNSEATWQGGSKLFA 686
D +KP S +S + N P NS A G KLF
Sbjct: 513 -DSQSKPALGGGLFGNSNSNSSTIGQNKPVFGGTTQNTGLFGATGTNSSAVGSTG-KLFG 570
Query: 687 SKLNT 701
NT
Sbjct: 571 QNNNT 575
Score = 43.1 bits (100), Expect = 0.001
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
Frame = +3
Query: 48 NKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNTLFGNK 227
N+P+ G NLS T+S G+Q S SLF ++ +N N
Sbjct: 5 NRPM---FGGSNLSFGSNTSSFGGQQ-------------SQQPNSLFGNSNNNNNSTSNN 48
Query: 228 AQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNK--AQPNKLFGDISDTPKSSG-- 395
AQ FG T+ + + N+LFG+ +T + FG A N FG ++ + S+G
Sbjct: 49 AQSG--FGGF--TSAAGSNSNSLFGNNNTQNNGAFGQSMGATQNSPFGSLNSSNASNGNT 104
Query: 396 -----GQGIFGLNAQKCNLFNSLNESIKNETKLD------------NVNKESSSNLFGVK 524
G FG N N FN+ + S + + N N +S+LFG +
Sbjct: 105 FGGSSSMGSFGGNTN--NAFNNNSNSTNSPFGFNKPNTGGTLFGSQNNNSAGTSSLFGGQ 162
Query: 525 PDGTDQS-NKPLFSFTSAVNSN 587
T + SF + +N N
Sbjct: 163 STSTTGTFGNTGSSFGTGLNGN 184
>sp|P14907|NSP1_YEAST Nucleoporin NSP1 (Nuclear pore protein NSP1) (Nucleoskeletal-like
protein) (p110)
Length = 823
Score = 55.1 bits (131), Expect = 2e-07
Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Frame = +3
Query: 81 NLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSL---FSSAAPSNTLFGNKAQPNKLFG 251
N +S+ G + Q T FNNS N + S+ F S NT FGN + +FG
Sbjct: 26 NQNSSTGAGAFGTGQSTFGFNNSAPNNTNNANSSITPAFGSNNTGNTAFGNSNPTSNVFG 85
Query: 252 DISDTTK---SAAPGNTLFGDKSTNKD----SLFGNKAQPNKLFGDISD---TPKSSGGQ 401
+ TT S + G +LFG S + + GN + LF + ++ T + GG
Sbjct: 86 SNNSTTNTFGSNSAGTSLFGSSSAQQTKSNGTAGGNTFGSSSLFNNSTNSNTTKPAFGGL 145
Query: 402 GIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGTDQSNKPLFSFTSAVN 581
G N + + N S N NK + S D + +KP FSF S+V
Sbjct: 146 NFGGGNNTTPSSTGNANTSNNLFGATANANKPAFSFGATTNDDKKTEPDKPAFSFNSSVG 205
Query: 582 SNT 590
+ T
Sbjct: 206 NKT 208
Score = 38.1 bits (87), Expect = 0.030
Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 5/160 (3%)
Frame = +3
Query: 123 QPTNIFNNSVDFN---KSPTGGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNT 293
+P FN+SV ++PT G F S N A+P+ FG S A P
Sbjct: 195 KPAFSFNSSVGNKTDAQAPTTGFSFGSQLGGNKTVNEAAKPSLSFGSGS---AGANPAGA 251
Query: 294 LFGDKSTNKDSLFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNET 473
+ +TN+ A+P FG + K++ F A+ +E
Sbjct: 252 SQPEPTTNE------PAKPALSFGTATSDNKTTNTTPSFSFGAK------------SDEN 293
Query: 474 KLDNVNKESSSNLFGVKPD--GTDQSNKPLFSFTSAVNSN 587
K +K + S FG KP+ D S+KP FSF + N +
Sbjct: 294 KAGATSKPAFS--FGAKPEEKKDDNSSKPAFSFGAKSNED 331
Score = 34.3 bits (77), Expect = 0.43
Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 8/189 (4%)
Frame = +3
Query: 45 PNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKS-PTGGSLFS-SAAPSNTLF 218
P KP S G S N+ TN+ P+ F D NK+ T FS A P
Sbjct: 261 PAKPALS-FGTAT-SDNKTTNTT----PSFSFGAKSDENKAGATSKPAFSFGAKPEEKKD 314
Query: 219 GNKAQPNKLFGDISDTTK---SAAPGNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKS 389
N ++P FG S+ K +A P + FG K K++ ++P FG SD K
Sbjct: 315 DNSSKPAFSFGAKSNEDKQDGTAKPAFS-FGAKPAEKNN--NETSKPAFSFGAKSDEKKD 371
Query: 390 S-GGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGT--DQSNKPLF 560
+ F A+ +E K +K + S FG KP+ D S+KP F
Sbjct: 372 GDASKPAFSFGAKP------------DENKASATSKPAFS--FGAKPEEKKDDNSSKPAF 417
Query: 561 SFTSAVNSN 587
SF + N +
Sbjct: 418 SFGAKSNED 426
>sp|Q02199|NUP49_YEAST Nucleoporin NUP49/NSP49 (Nuclear pore protein NUP49/NSP49)
Length = 472
Score = 50.1 bits (118), Expect = 8e-06
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 31/185 (16%)
Frame = +3
Query: 18 NSVSGFSLFPNKP-----VCSPLGVPNLSSNQGT----------NSIFGKQPTNIFNNSV 152
++ +G LF NKP L N +SN G+ +FG TN NNS
Sbjct: 80 SATTGGGLFGNKPNNTANTGGGLFGANSNSNSGSLFGSNNAQTSRGLFGNNNTNNINNSS 139
Query: 153 D---------FNKSPTGG-SLF----SSAAPSNT--LFGNKAQPNKLFGDISDTTKSAAP 284
F P GG SLF +S+AP+ +FG K LFG+ + T +
Sbjct: 140 SGMNNASAGLFGSKPAGGTSLFGNTSTSSAPAQNQGMFGAKPAGTSLFGNNAGNTTT--- 196
Query: 285 GNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIK 464
G LFG K T SLFG+ N + S+ S+ G G+FG Q+ + +++
Sbjct: 197 GGGLFGSKPTGATSLFGSSNNNNN--NNNSNNIMSASG-GLFGNQQQQLQQQPQMQCALQ 253
Query: 465 NETKL 479
N ++L
Sbjct: 254 NLSQL 258
>sp|P49687|NU145_YEAST Nucleoporin NUP145 precursor (Nuclear pore protein NUP145)
[Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin
NUP145C (C-NUP145)]
Length = 1317
Score = 47.0 bits (110), Expect = 6e-05
Identities = 66/266 (24%), Positives = 103/266 (38%), Gaps = 30/266 (11%)
Frame = +3
Query: 6 NQNVNSVS----GFSLFPNKPVCSP---LGVPNLSSNQGTNSIFGKQ--------PTNIF 140
N N NS+S SLF NKP G N ++++ S+FG T +F
Sbjct: 63 NSNANSISQQPANNSLFGNKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLF 122
Query: 141 NNSVDFNKSPTGGSLFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNK 320
+ S + S G LF ++ +N + Q LFG TT A G STN
Sbjct: 123 SGSNNIASSTQNGGLFGNS--NNNNITSTTQNGGLFG--KPTTTPAGAGGLFGNSSSTNS 178
Query: 321 DS-LFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVN-- 491
+ LFG+ + G P +S G+FG N ++ N++
Sbjct: 179 TTGLFGSNNTQSST-GIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNV 237
Query: 492 --------KESSSNLFGV--KPDGTDQ--SNKPLFSFTSAVNSNTPXXXXXXXXXXXXXX 635
+ +S+L V K D + N+ +SF+S+V+ N P
Sbjct: 238 PMAVADMPRSITSSLSDVNGKSDAEPKPIENRRTYSFSSSVSGNAP------------LP 285
Query: 636 XALNSEATWQGGSKLFASKLNTSENE 713
A S + ++L A++ +TS NE
Sbjct: 286 LASQSSLVSRLSTRLKATQKSTSPNE 311
Score = 37.4 bits (85), Expect = 0.051
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Frame = +3
Query: 183 LFSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTL-FGDKSTNKDSLFGN-KAQPNK 356
+F+ + S FGN+ + T+ A P ++L F KST LFGN N
Sbjct: 1 MFNKSVNSGFTFGNQ-------NTSTPTSTPAQPSSSLQFPQKSTG---LFGNVNVNAN- 49
Query: 357 LFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGT 536
+ TP SGG +F N+ NS+++ N + N + S LFG + T
Sbjct: 50 -----TSTPSPSGG--LFNANSNA----NSISQQPANNSLFGNKPAQPSGGLFGATNNTT 98
Query: 537 DQSNKPLFSFTSAVNSNT 590
+S LF +A ++T
Sbjct: 99 SKSAGSLFGNNNATANST 116
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa
nucleoporin)
Length = 937
Score = 45.1 bits (105), Expect = 2e-04
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Frame = +3
Query: 39 LFPNKPVCSPLGVPNLSSNQGTNSIF--GKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNT 212
LF + P S L S+ TNS F G+ T ++ F +P GG + +
Sbjct: 226 LFGSSPATS--SATGLFSSSTTNSAFSYGQNKTAFGTSTTGFGTNP-GGLFGQQNQQTTS 282
Query: 213 LFGNKAQPNKLFGDISDTTKSAAP-GNT-LFGDKSTNKDSLFG--NKAQPNKLFGDISDT 380
LF +K FG + T + GNT G STN LFG +QP LFG ++T
Sbjct: 283 LF------SKPFGQATTTPNTGFSFGNTSTLGQPSTNTMGLFGVTQASQPGGLFGTATNT 336
Query: 381 PKSSG---GQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSS---------NLFGVK 524
+ G G+FG Q F ++ ++ KL ++S LFG K
Sbjct: 337 STGTAFGTGTGLFG---QPNTGFGAVGSTLFGNNKLTTFGTSTTSAPSFGTTSGGLFGNK 393
Query: 525 PDGTDQSNKPLFSFTSAVNSN 587
P T +N +F N++
Sbjct: 394 PTLTLGTNTNTSNFGFGTNNS 414
Score = 38.1 bits (87), Expect = 0.030
Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 8/165 (4%)
Frame = +3
Query: 48 NKPVCSPLGVPN---LSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNTLF 218
NK +P G +S G N+ FG F S + S TGG LF
Sbjct: 3 NKSFGTPFGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSSNTGG-----------LF 51
Query: 219 GN-KAQPNKLFG--DISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNKLFGDISD--TP 383
GN + +P LFG +S S + G FG + +SLFG LF ++
Sbjct: 52 GNSQTKPGGLFGTSSLSQPATSTSTGFG-FGTSTGTSNSLFGTANTGTSLFSSQNNAFAQ 110
Query: 384 KSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFG 518
G G FG + LF + N + N +S +LFG
Sbjct: 111 NKPTGFGNFGTSTSSGGLFGTTNTT-------SNPFGNTSGSLFG 148
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 precursor [Contains:
Nuclear pore complex protein Nup98 (Nucleoporin Nup98)
(98 kDa nucleoporin); Nuclear pore complex protein Nup96
(Nucleoporin Nup96) (96 kDa nucleoporin)]
Length = 1729
Score = 44.3 bits (103), Expect = 4e-04
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Frame = +3
Query: 39 LFPNKPVCSPLGVPNLSSNQGTNSIF--GKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNT 212
LF + P S L S+ TNS F G+ T ++ F +P GG + +
Sbjct: 227 LFGSSPATS--SATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNP-GGLFGQQNQQTTS 283
Query: 213 LFGNKAQPNKLFGDISDTTKSAAP-GNT-LFGDKSTNKDSLFG--NKAQPNKLFGDISDT 380
LF +K FG + T + GNT G STN LFG +QP LFG ++T
Sbjct: 284 LF------SKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNT 337
Query: 381 PKSSG---GQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSS---------NLFGVK 524
+ G G+FG Q F ++ ++ KL ++S LFG K
Sbjct: 338 STGTAFGTGTGLFG---QTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFGNK 394
Query: 525 PDGTDQSNKPLFSFTSAVNSN 587
P T +N +F N++
Sbjct: 395 PTLTLGTNTNTSNFGFGTNTS 415
Score = 33.5 bits (75), Expect = 0.74
Identities = 42/144 (29%), Positives = 54/144 (37%), Gaps = 19/144 (13%)
Frame = +3
Query: 87 SSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSLFSSAAPSNTLFGNKA--QP-------- 236
+S G N+ FG F S + + TGG +S LFG + QP
Sbjct: 20 TSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGF 79
Query: 237 ---------NKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKS 389
N LFG S T + N F + NK + FGN FG T S
Sbjct: 80 GFGTSTGTANTLFGTASTGTSLFSSQNNAF---AQNKPTGFGN-------FG----TSTS 125
Query: 390 SGGQGIFGLNAQKCNLFNSLNESI 461
SG G+FG N F S + S+
Sbjct: 126 SG--GLFGTTNTTSNPFGSTSGSL 147
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 (Nuclear pore protein nup189)
Length = 1778
Score = 43.5 bits (101), Expect = 7e-04
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +3
Query: 222 NKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQP-------NKLFGDISDT 380
N Q LFG S+T PGNTLFG ++T+ N QP LFG+ ++T
Sbjct: 20 NNQQTGGLFGSNSNT-----PGNTLFGSQNTSTTGFGQNTTQPLFGSNTNGGLFGNRNNT 74
Query: 381 PKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGTDQSNKPLF 560
++GG G FG+++ +F N T +N S LFG + + F
Sbjct: 75 -TTTGGTG-FGMSS-GTGMFGQSNTPAFGGT--NNATNPSGGGLFGSNTANNNANTGTSF 129
Query: 561 SFTSAVNS 584
SF S S
Sbjct: 130 SFGSNAGS 137
Score = 42.7 bits (99), Expect = 0.001
Identities = 48/175 (27%), Positives = 64/175 (36%), Gaps = 8/175 (4%)
Frame = +3
Query: 90 SNQGTNSIFGKQPTNIF-----NNSVDFNKSPTGGSLFSSAAPSNTLFG---NKAQPNKL 245
SN G T +F NN+ + N +PT S F SN FG N A
Sbjct: 392 SNTNNQPNSGTMGTGLFGFGANNNTANNNTAPT--STFGGNNSSNFSFGANNNAATKPSG 449
Query: 246 FGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQ 425
FG TT + A G FG + N P FG + T G G+FG
Sbjct: 450 FG-FGSTTTTPASGGFSFGQNANNA---------PKPAFGSTATTAPKPAGTGLFGGLGA 499
Query: 426 KCNLFNSLNESIKNETKLDNVNKESSSNLFGVKPDGTDQSNKPLFSFTSAVNSNT 590
N + N + + N N + SN+FG T + LF T N+ +
Sbjct: 500 GANTNTATNATGTGGSLFGNAN-TAGSNMFGSANSSTPGTG--LFGSTQTNNATS 551
Score = 40.0 bits (92), Expect = 0.008
Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 14/159 (8%)
Frame = +3
Query: 141 NNSVDFNKSPTGGSLFSSA-APSNTLFG--NKAQPNK-LFGDISDTTKSAAPGNTLFGDK 308
N + N + TGGSLF +A + +FG N + P LFG ++ G LFG
Sbjct: 502 NTNTATNATGTGGSLFGNANTAGSNMFGSANSSTPGTGLFGSTQTNNATSNTGTGLFGSN 561
Query: 309 STNKDSLFGN-----KAQPNKLFGDISDTPKSSGGQGIFGLN-----AQKCNLFNSLNES 458
+ N + G+ LFG+ + S+ G+FG + AQ N L
Sbjct: 562 NANTTNTGGSLFNKPSTTTGGLFGNTTAQQPSTTTSGLFGASNTNNQAQTSNFGTGLFGG 621
Query: 459 IKNETKLDNVNKESSSNLFGVKPDGTDQSNKPLFSFTSA 575
+ + + N +G N PLFS T++
Sbjct: 622 SQAGQQQQPLQASIDQNPYG---------NNPLFSSTTS 651
Score = 37.4 bits (85), Expect = 0.051
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 2/176 (1%)
Frame = +3
Query: 6 NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSL 185
N+N + +G + F G N + GTN+ +F ++ N + TG S
Sbjct: 70 NRNNTTTTGGTGFGMSSGTGMFGQSNTPAFGGTNNATNPSGGGLFGSNTANNNANTGTSF 129
Query: 186 FSSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNKLFG 365
+ +T FG++ LFG S TT + G S+N +++ G P +
Sbjct: 130 SFGSNAGSTGFGSQGTGGGLFG--SSTTPATTNAFGTSGFVSSNANAVNGTANPPYAVTS 187
Query: 366 DIS-DTPKSSGGQGIFGLNAQKCNLFNSLNESIKNE-TKLDNVNKESSSNLFGVKP 527
+ T +S Q I + A + F L N+ + N + ++++ FG P
Sbjct: 188 EKDPQTNGTSVFQSITCMPAYRSYSFEELRLQDYNQGRRFGNASSTNTTSAFGSTP 243
Score = 37.4 bits (85), Expect = 0.051
Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Frame = +3
Query: 12 NVNSVSGFSLFPNKPVCSPLGVP---NLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGS 182
N +S + S F + P P NLS + FG T+ N+ + GGS
Sbjct: 229 NASSTNTTSAFGSTPAFGASTTPFGQNLSGTTNNATPFG---TSNATNTTPGSGLFGGGS 285
Query: 183 LFSSAAPSNTLFGNKAQ--PNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQPNK 356
F S +NT FG+ LFG ++TT + + G LFG S F +
Sbjct: 286 AFGSNT-TNTGFGSGTNNASGGLFGQNNNTTSTPSTG--LFGG------STFNQQKPAFS 336
Query: 357 LFGDISDTPKSSGGQGIFGLN 419
FG ++T + G G+FG N
Sbjct: 337 GFGSTTNTTNTGTGTGLFGSN 357
Score = 36.2 bits (82), Expect = 0.11
Identities = 47/163 (28%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Frame = +3
Query: 159 NKSPTGGSLFSSA-APSNTLFG-----------NKAQP-------NKLFGDISDTTKSAA 281
N TGG S++ P NTLFG N QP LFG+ ++TT +
Sbjct: 20 NNQQTGGLFGSNSNTPGNTLFGSQNTSTTGFGQNTTQPLFGSNTNGGLFGNRNNTTTT-- 77
Query: 282 PGNTLFGDKSTNKDSLFGNKAQPNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESI 461
G T FG S +FG P FG ++ SGG G+FG N N + S
Sbjct: 78 -GGTGFGMSSGT--GMFGQSNTP--AFGGTNNATNPSGG-GLFGSNTANNNANTGTSFSF 131
Query: 462 -KNETKLDNVNKESSSNLFGVKPDGTDQSNKPLFSFTSAVNSN 587
N ++ + LFG T + F + V+SN
Sbjct: 132 GSNAGSTGFGSQGTGGGLFG---SSTTPATTNAFGTSGFVSSN 171
>sp|Q09793|NG79_SCHPO Putative nucleoporin C22G7.09c
Length = 425
Score = 40.8 bits (94), Expect = 0.005
Identities = 48/183 (26%), Positives = 70/183 (38%), Gaps = 6/183 (3%)
Frame = +3
Query: 6 NQNVNSVSGFSLFPNKPVCSPLGVPNLSSNQGTNSIFGKQPTNIFNNSVDFNKSPTGGSL 185
NQN + +G LF + + N +N ++ FG F + K TGGSL
Sbjct: 17 NQNTGTSAGTGLFSSNTFGN-----NTQANTPASTGFGGVTGGAFGQT----KPQTGGSL 67
Query: 186 F------SSAAPSNTLFGNKAQPNKLFGDISDTTKSAAPGNTLFGDKSTNKDSLFGNKAQ 347
F +S P LFG Q AAPG +LFG ST K G
Sbjct: 68 FGNKPNATSTTPGLNLFGQNPQ--------------AAPGGSLFG-ASTTKPQAPGGLFN 112
Query: 348 PNKLFGDISDTPKSSGGQGIFGLNAQKCNLFNSLNESIKNETKLDNVNKESSSNLFGVKP 527
N+ + + G+FGL+ Q N+T+ +++++LFG
Sbjct: 113 QNQTQAQPAQAAPTG---GLFGLSGQ-------------NQTQSQTQPAQANTSLFGQSN 156
Query: 528 DGT 536
GT
Sbjct: 157 IGT 159
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,637,734
Number of Sequences: 369166
Number of extensions: 2108267
Number of successful extensions: 6132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6061
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)