Planaria EST Database


DrC_01451

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01451
         (326 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95980|RECK_HUMAN  Reversion-inducing cysteine-rich prote...    35   0.053
sp|Q9Z0J1|RECK_MOUSE  Reversion-inducing cysteine-rich prote...    35   0.069
sp|P21783|NOTCH_XENLA  Neurogenic locus notch protein homolo...    28   4.9  
sp|Q94981|ARI1_DROME  Ariadne-1 protein (Ari-1)                    28   6.5  
sp|O62852|TRPC5_RABIT  Short transient receptor potential ch...    28   6.5  
sp|Q9UL62|TRPC5_HUMAN  Short transient receptor potential ch...    28   8.4  
>sp|O95980|RECK_HUMAN Reversion-inducing cysteine-rich protein with Kazal motifs
           precursor (hRECK) (Suppressor of tumorigenicity 15)
           (ST15)
          Length = 971

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  CEDDLRAQCNGVCKNANLKNDCTNECWKSWKYGRFSCRS 212
           CE  +  +C   CK A+ KND +  C K ++   FSC S
Sbjct: 105 CELAIALECRQACKQASSKNDISKVCRKEYENALFSCIS 143
>sp|Q9Z0J1|RECK_MOUSE Reversion-inducing cysteine-rich protein with Kazal motifs
           precursor (mRECK)
          Length = 971

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  CEDDLRAQCNGVCKNANLKNDCTNECWKSWKYGRFSCRS 212
           CE  +  +C   CK A+ KND +  C K ++   FSC S
Sbjct: 105 CELAIGLECRQACKQASSKNDISKVCRKEYENALFSCIS 143
>sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog precursor (XOTCH protein)
          Length = 2524

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
 Frame = +3

Query: 30   CSDKILNQLSQIQTGpreACYKCEDDLRAQCNGVCKNANLKNDCTNE--CWKSWKYGRFS 203
            CSD I         G R    KCE+D+    +  CKN     DC N   C     +    
Sbjct: 921  CSDGINMFFCNCPAGFRGP--KCEEDINECASNPCKNGANCTDCVNSYTCTCQPGFSGIH 978

Query: 204  CRSN 215
            C SN
Sbjct: 979  CESN 982
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
          Length = 503

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 9   LKKQMLFCSDKILNQLSQIQTGpreACYKCEDDLRAQ--CNG-VCKNANLKNDCTNECWK 179
           LKK +  C D   ++ S       + C +C   +     CN  VCKN N KN+    C  
Sbjct: 267 LKKWIKKCDDD--SETSNWIAANTKECPRCSVTIEKDGGCNHMVCKNQNCKNEFCWVCLG 324

Query: 180 SWK 188
           SW+
Sbjct: 325 SWE 327
>sp|O62852|TRPC5_RABIT Short transient receptor potential channel 5 (TrpC5) (Rtrp5)
            (Capacitative calcium entry channel 2) (CCE2)
          Length = 974

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
 Frame = +3

Query: 3    EALKKQMLFCSDKILNQ--------LSQIQTGpreACYKCEDDLRAQCNGVCKNANLKND 158
            E   + M   SD I+ Q         SQ++ G  EAC + E +L     G  + A   ++
Sbjct: 859  EPSSEPMYTISDGIVQQHYMWQDIRYSQMEKGKAEACSQSEINLSEVELGEVRGAAQSSE 918

Query: 159  CTNECWKSWKYGRFSCRSNLK 221
            C   C  S       C SN K
Sbjct: 919  CPLTCSSSLHCASSICSSNSK 939
>sp|Q9UL62|TRPC5_HUMAN Short transient receptor potential channel 5 (TrpC5) (Htrp-5) (Htrp5)
          Length = 973

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
 Frame = +3

Query: 3    EALKKQMLFCSDKILNQ--------LSQIQTGpreACYKCEDDLRAQCNGVCKNANLKND 158
            E   + M   SD I+ Q         SQ++ G  EAC + E +L     G  + A   ++
Sbjct: 858  EPSSEPMYTISDGIVQQHCMWQDIRYSQMEKGKAEACSQSEINLSEVELGEVQGAAQSSE 917

Query: 159  CTNECWKSWKYGRFSCRSNLK 221
            C   C  S       C SN K
Sbjct: 918  CPLACSSSLHCASSICSSNSK 938
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,071,357
Number of Sequences: 369166
Number of extensions: 551367
Number of successful extensions: 1379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)