Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_G13
(326 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95980|RECK_HUMAN Reversion-inducing cysteine-rich prote... 35 0.053
sp|Q9Z0J1|RECK_MOUSE Reversion-inducing cysteine-rich prote... 35 0.069
sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolo... 28 4.9
sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1) 28 6.5
sp|O62852|TRPC5_RABIT Short transient receptor potential ch... 28 6.5
sp|Q9UL62|TRPC5_HUMAN Short transient receptor potential ch... 28 8.4
>sp|O95980|RECK_HUMAN Reversion-inducing cysteine-rich protein with Kazal motifs
precursor (hRECK) (Suppressor of tumorigenicity 15)
(ST15)
Length = 971
Score = 35.0 bits (79), Expect = 0.053
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 96 CEDDLRAQCNGVCKNANLKNDCTNECWKSWKYGRFSCRS 212
CE + +C CK A+ KND + C K ++ FSC S
Sbjct: 105 CELAIALECRQACKQASSKNDISKVCRKEYENALFSCIS 143
>sp|Q9Z0J1|RECK_MOUSE Reversion-inducing cysteine-rich protein with Kazal motifs
precursor (mRECK)
Length = 971
Score = 34.7 bits (78), Expect = 0.069
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 96 CEDDLRAQCNGVCKNANLKNDCTNECWKSWKYGRFSCRS 212
CE + +C CK A+ KND + C K ++ FSC S
Sbjct: 105 CELAIGLECRQACKQASSKNDISKVCRKEYENALFSCIS 143
>sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog precursor (XOTCH protein)
Length = 2524
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = +3
Query: 30 CSDKILNQLSQIQTGpreACYKCEDDLRAQCNGVCKNANLKNDCTNE--CWKSWKYGRFS 203
CSD I G R KCE+D+ + CKN DC N C +
Sbjct: 921 CSDGINMFFCNCPAGFRGP--KCEEDINECASNPCKNGANCTDCVNSYTCTCQPGFSGIH 978
Query: 204 CRSN 215
C SN
Sbjct: 979 CESN 982
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
Length = 503
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 9 LKKQMLFCSDKILNQLSQIQTGpreACYKCEDDLRAQ--CNG-VCKNANLKNDCTNECWK 179
LKK + C D ++ S + C +C + CN VCKN N KN+ C
Sbjct: 267 LKKWIKKCDDD--SETSNWIAANTKECPRCSVTIEKDGGCNHMVCKNQNCKNEFCWVCLG 324
Query: 180 SWK 188
SW+
Sbjct: 325 SWE 327
>sp|O62852|TRPC5_RABIT Short transient receptor potential channel 5 (TrpC5) (Rtrp5)
(Capacitative calcium entry channel 2) (CCE2)
Length = 974
Score = 28.1 bits (61), Expect = 6.5
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Frame = +3
Query: 3 EALKKQMLFCSDKILNQ--------LSQIQTGpreACYKCEDDLRAQCNGVCKNANLKND 158
E + M SD I+ Q SQ++ G EAC + E +L G + A ++
Sbjct: 859 EPSSEPMYTISDGIVQQHYMWQDIRYSQMEKGKAEACSQSEINLSEVELGEVRGAAQSSE 918
Query: 159 CTNECWKSWKYGRFSCRSNLK 221
C C S C SN K
Sbjct: 919 CPLTCSSSLHCASSICSSNSK 939
>sp|Q9UL62|TRPC5_HUMAN Short transient receptor potential channel 5 (TrpC5) (Htrp-5) (Htrp5)
Length = 973
Score = 27.7 bits (60), Expect = 8.4
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Frame = +3
Query: 3 EALKKQMLFCSDKILNQ--------LSQIQTGpreACYKCEDDLRAQCNGVCKNANLKND 158
E + M SD I+ Q SQ++ G EAC + E +L G + A ++
Sbjct: 858 EPSSEPMYTISDGIVQQHCMWQDIRYSQMEKGKAEACSQSEINLSEVELGEVQGAAQSSE 917
Query: 159 CTNECWKSWKYGRFSCRSNLK 221
C C S C SN K
Sbjct: 918 CPLACSSSLHCASSICSSNSK 938
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,071,357
Number of Sequences: 369166
Number of extensions: 551367
Number of successful extensions: 1379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)