Planaria EST Database


DrC_01450

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01450
         (367 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04636|MDHM_RAT  Malate dehydrogenase, mitochondrial prec...   126   2e-29
sp|P00346|MDHM_PIG  Malate dehydrogenase, mitochondrial prec...   125   3e-29
sp|P40926|MDHM_HUMAN  Malate dehydrogenase, mitochondrial pr...   124   5e-29
sp|P08249|MDHM_MOUSE  Malate dehydrogenase, mitochondrial pr...   123   2e-28
sp|Q6D9D1|MDH_ERWCT  Malate dehydrogenase                          98   7e-21
sp|P37226|MDH_PHOPR  Malate dehydrogenase                          97   2e-20
sp|Q83Q04|MDH_SHIFL  Malate dehydrogenase                          96   3e-20
sp|P61889|MDH_ECOLI  Malate dehydrogenase >gi|48429005|sp|P6...    94   1e-19
sp|Q5E875|MDH_VIBF1  Malate dehydrogenase                          94   1e-19
sp|Q87SU7|MDH_VIBPA  Malate dehydrogenase                          93   2e-19
>sp|P04636|MDHM_RAT Malate dehydrogenase, mitochondrial precursor
          Length = 338

 Score =  126 bits (316), Expect = 2e-29
 Identities = 59/108 (54%), Positives = 86/108 (79%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           KI+ AG+E+V+AKAG GS+TLSM++A  RF+ SL++A +G+ GVIE +FV+S+ETEC YF
Sbjct: 229 KIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYF 288

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRFAAN 329
           ++PLL G +G+E+NLGIG++T FE  ++  AIPE+K  I+ G+ F  N
Sbjct: 289 STPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFVKN 336
>sp|P00346|MDHM_PIG Malate dehydrogenase, mitochondrial precursor
          Length = 338

 Score =  125 bits (314), Expect = 3e-29
 Identities = 57/108 (52%), Positives = 86/108 (79%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+ AG+E+V+AKAG GS+TLSM++A  RF+ SL++A +G+ GV+E +FVKS+ET+C YF
Sbjct: 229 RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 288

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRFAAN 329
           ++PLL G +GIE+NLGIG+++ FE  ++  AIPE+K  I+ G+ F  N
Sbjct: 289 STPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKN 336
>sp|P40926|MDHM_HUMAN Malate dehydrogenase, mitochondrial precursor
          Length = 338

 Score =  124 bits (312), Expect = 5e-29
 Identities = 57/105 (54%), Positives = 85/105 (80%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+ AG+E+V+AKAG GS+TLSM++A  RF+ SL++A +G+ GV+E +FVKS+ETEC YF
Sbjct: 229 RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYF 288

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRF 320
           ++PLL G +GIE+NLGIG+++ FE  ++  AIPE+K  I+ G+ F
Sbjct: 289 STPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDF 333
>sp|P08249|MDHM_MOUSE Malate dehydrogenase, mitochondrial precursor
          Length = 338

 Score =  123 bits (308), Expect = 2e-28
 Identities = 57/108 (52%), Positives = 85/108 (78%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+ AG+E+V+AKAG GS+TLSM++A  RF+ SL++A +G  GV+E +FV+S+ETEC YF
Sbjct: 229 RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGLEGVVECSFVQSKETECTYF 288

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRFAAN 329
           ++PLL G +G+E+NLGIG++T FE  ++  AIPE+K  I+ G+ F  N
Sbjct: 289 STPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFVKN 336
>sp|Q6D9D1|MDH_ERWCT Malate dehydrogenase
          Length = 311

 Score = 97.8 bits (242), Expect = 7e-21
 Identities = 49/105 (46%), Positives = 70/105 (66%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+NAG+E+VEAKAG GS+TLSM  AA RF  SL+ A  G  GV+E A+V+S+     +F
Sbjct: 205 RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGENGVVECAYVESDGKHARFF 264

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRF 320
           A P+L G +G+     IG ++ FE + L S +  +K+DIE G+ F
Sbjct: 265 AQPILLGKDGVAERKDIGTLSAFEQNALSSMLDTLKQDIELGETF 309
>sp|P37226|MDH_PHOPR Malate dehydrogenase
          Length = 312

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 47/107 (43%), Positives = 70/107 (65%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+NAG+E+VEAKAG GS+TLSM  AAYRF  SL+ A  G  G++E A+V+ +     +F
Sbjct: 205 RIQNAGTEVVEAKAGGGSATLSMGQAAYRFGLSLVRALQGEQGIVECAYVEGDGKHARFF 264

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRFAA 326
           A P+L G +G+E  +  G+++ FE   L + +  +  DI  G+ FAA
Sbjct: 265 AQPVLLGKDGVEEVIDYGKLSTFEQEALNNMLDTLTSDITLGEEFAA 311
>sp|Q83Q04|MDH_SHIFL Malate dehydrogenase
          Length = 312

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 48/105 (45%), Positives = 68/105 (64%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+NAG+E+VEAKAG GS+TLSM  AA RF  SL+ A  G  GV+E A+V+ +     +F
Sbjct: 205 RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 264

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRF 320
           + PLL G  G+E    IG ++ FE + L+  +  +K+DI  GK F
Sbjct: 265 SQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGKEF 309
>sp|P61889|MDH_ECOLI Malate dehydrogenase
 sp|P61891|MDH_ECO57 Malate dehydrogenase
 sp|P61890|MDH_ECOL6 Malate dehydrogenase
          Length = 312

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 47/105 (44%), Positives = 68/105 (64%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+NAG+E+VEAKAG GS+TLSM  AA RF  SL+ A  G  GV+E A+V+ +     +F
Sbjct: 205 RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 264

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRF 320
           + PLL G  G+E    IG ++ FE + L+  +  +K+DI  G+ F
Sbjct: 265 SQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEF 309
>sp|Q5E875|MDH_VIBF1 Malate dehydrogenase
          Length = 311

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 47/105 (44%), Positives = 69/105 (65%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+NAG+E+VEAKAG GS+TLSM  AA RF  SL++A SG  GV+E A+V+       +F
Sbjct: 205 RIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVKALSGEEGVVECAYVEGNGEHARFF 264

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRF 320
           A P+L G  G+E     G+++ FE   L+S +  ++ DI+ G+ F
Sbjct: 265 AQPILLGKNGVEEIQSYGELSAFEQEALESMLDTLRGDIKIGEEF 309
>sp|Q87SU7|MDH_VIBPA Malate dehydrogenase
          Length = 311

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 47/106 (44%), Positives = 67/106 (63%)
 Frame = +3

Query: 6   KIRNAGSEIVEAKAGHGSSTLSMSWAAYRFINSLIEAKSGRTGVIEPAFVKSEETECEYF 185
           +I+NAG+E+VEAKAG GS+TLSM  AA RF  +L+ A  G  GV+E A+V+ +     YF
Sbjct: 205 RIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVRALQGEEGVVECAYVEGDSEHAPYF 264

Query: 186 ASPLLFGTEGIERNLGIGQMTEFEISLLKSAIPEIKRDIEAGKRFA 323
           A P+  G EG+E  L  G++++FE + L   +  +  DI  G  FA
Sbjct: 265 AQPVKLGKEGVEEVLSYGELSDFEKAALDGMLETLNGDINIGVEFA 310
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,406,976
Number of Sequences: 369166
Number of extensions: 652080
Number of successful extensions: 1920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1907
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)