Planaria EST Database


DrC_01439

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01439
         (961 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IZF2|GP116_HUMAN  Probable G-protein coupled receptor 1...    63   1e-09
sp|Q9WVT0|GP116_RAT  Probable G-protein coupled receptor 116...    60   9e-09
sp|P29534|VCAM1_RAT  Vascular cell adhesion protein 1 precur...    50   1e-05
sp|P14781|CNTN1_CHICK  Contactin 1 precursor (Neural cell re...    49   2e-05
sp|P20241|NRG_DROME  Neuroglian precursor                          49   2e-05
sp|Q90688|MYPC3_CHICK  Myosin-binding protein C, cardiac-typ...    48   4e-05
sp|P98159|NUDEL_DROME  Serine protease nudel precursor             48   5e-05
sp|Q06561|UNC52_CAEEL  Basement membrane proteoglycan precur...    47   6e-05
sp|O94856|NFASC_HUMAN  Neurofascin precursor                       47   6e-05
sp|Q63191|AEGP_RAT  Apical endosomal glycoprotein precursor        47   8e-05
>sp|Q8IZF2|GP116_HUMAN Probable G-protein coupled receptor 116 precursor
          Length = 1346

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 63/233 (27%), Positives = 97/233 (41%), Gaps = 23/233 (9%)
 Frame = +1

Query: 16  EAESRGTNVEWFFNNEKLNSFNSETYNIYR---NDRTYVSIITLVNITPKNEGLYSCKVD 186
           E E   +NV W +  ++L   NS  ++IY    N+ T VS +T+ NITP + G Y CK+ 
Sbjct: 294 EKEVLSSNVSWRYEEQQLEIQNSSRFSIYTALFNNMTSVSKLTIHNITPGDAGEYVCKLI 353

Query: 187 NII------KKANLIVVKEDPTLTINPERIIRNEGEPVEFHCRGNNIPQFSNTKIKWSFR 348
             I      KK +++ ++    +  N E  +  +  PV  +C       +S  K++W   
Sbjct: 354 LDIFEYECKKKIDVMPIQ----ILANEEMKVMCDNNPVSLNCCSQGNVNWS--KVEW--- 404

Query: 349 SRDGRIFLPNVVSENRWELVNSNDTPETSF-ISIQGSLYKDDG------------FYTCT 489
            ++G+I +P               TPET    S      K DG             YTC 
Sbjct: 405 KQEGKINIPG--------------TPETDIDSSCSRYTLKADGTQCPSGSSGTTVIYTCE 450

Query: 490 APDGSQKTAELIIKRREDSL-RLTITPETVKVRDGQPIIVECFSESEKTGEPY 645
                       IK    S+  LTITP+ + V +GQ   ++C S+     E Y
Sbjct: 451 FISAYGARGSANIKVTFISVANLTITPDPISVSEGQNFSIKCISDVSNYDEVY 503
>sp|Q9WVT0|GP116_RAT Probable G-protein coupled receptor 116 precursor (G-protein
           coupled hepta-helical receptor Ig-hepta)
          Length = 1349

 Score = 60.1 bits (144), Expect = 9e-09
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 23/233 (9%)
 Frame = +1

Query: 16  EAESRGTNVEWFFNNEKLNSFNSETYNIYR---NDRTYVSIITLVNITPKNEGLYSCKVD 186
           E+E   +N  WF+  ++ +  NS+ ++I+    N+ + V+ +T+ N T  + GLY C V 
Sbjct: 292 ESEFVSSNTSWFYGEKRSDIQNSDKFSIHTSIINNISLVTRLTIFNFTQHDAGLYGCNVT 351

Query: 187 ------NIIKKANLIVVKEDPTLTINPERIIRNEGEPVEFHCRGNNIPQFSNTKIKWSFR 348
                   ++K ++  ++    +    ER +  +  P+  +C   NI  +S  +I+W   
Sbjct: 352 LDIFEYGTVRKLDVTPIR----ILAKEERKVVCDNNPISLNCCSENIANWS--RIEWK-- 403

Query: 349 SRDGRIFLPNVVSENRWELVNSNDTPETSFISIQGSL-YKDDG------------FYTCT 489
            ++G+I              N   TPET   S   +   K DG             YTC 
Sbjct: 404 -QEGKI--------------NIEGTPETDLESSCSTYTLKADGTQCPSGSSGTTVIYTCE 448

Query: 490 APDG-SQKTAELIIKRREDSLRLTITPETVKVRDGQPIIVECFSESEKTGEPY 645
                  K ++ I         LTITP+ + V +GQ   + C S+     E Y
Sbjct: 449 FVSVYGAKGSKNIAVTFTSVANLTITPDPISVSEGQSFSITCLSDVSSFDEVY 501
>sp|P29534|VCAM1_RAT Vascular cell adhesion protein 1 precursor (V-CAM 1)
          Length = 739

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
 Frame = +1

Query: 214 VVKEDPTLTINPERIIRNEGEPVEFHCRGNNIPQFSNTKIKWSFRSRDGRIFLPNVVSEN 393
           V  ++PT+ ++P  +   EG PV   C  +  P     KI WS + ++G +         
Sbjct: 509 VAPKEPTIWVSPSPV-PEEGSPVNLTCSSDGFP---TPKILWSRQLKNGEL--------- 555

Query: 394 RWELVNSNDTPETSFISIQGSLYKDDGFYTCTAPDG---SQKTAELIIKRREDSLRLTIT 564
             + ++ N T     +S   +  +D G Y C   +    S+K+ ELII+     ++LT+ 
Sbjct: 556 --QPLSQNTT-----LSFMATKMEDSGIYVCEGINEAGISKKSVELIIQGSSKDIQLTVF 608

Query: 565 PETVKVRDGQPIIVEC 612
           P +  V++G  +I+ C
Sbjct: 609 P-SKSVKEGDTVIISC 623
>sp|P14781|CNTN1_CHICK Contactin 1 precursor (Neural cell recognition molecule F11)
          Length = 1010

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 6/174 (3%)
 Frame = +1

Query: 130 ITLVNITPKNEGLYSCKVDN----IIKKANLIVVKEDPTLTINP--ERIIRNEGEPVEFH 291
           + +  +T ++ G+Y C  +N    I   A L +V   PT  +NP  ++I+  +G  V   
Sbjct: 367 LRIQGLTFEDAGMYQCIAENAHGIIYANAELKIVASPPTFELNPMKKKILAAKGGRVIIE 426

Query: 292 CRGNNIPQFSNTKIKWSFRSRDGRIFLPNVVSENRWELVNSNDTPETSFISIQGSLYKDD 471
           C+    P+    K  WS     G   L N    + W+            + I      D+
Sbjct: 427 CKPKAAPK---PKFSWS----KGTELLVNGSRIHIWD---------DGSLEIINVTKLDE 470

Query: 472 GFYTCTAPDGSQKTAELIIKRREDSLRLTITPETVKVRDGQPIIVECFSESEKT 633
           G YTC A +   K     +    ++ R+T+ P  V V  G+   ++C +  + T
Sbjct: 471 GRYTCFAENNRGKANSTGVLEMTEATRITLAPLNVDVTVGENATMQCIASHDPT 524

 Score = 38.9 bits (89), Expect = 0.022
 Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 8/195 (4%)
 Frame = +1

Query: 124 SIITLVNITPKNEGLYSCKVDNI---IKKANLIVVKEDPTLTINPERIIRNEGEPVEFHC 294
           +++ + NI  ++EGLY C+ +N     K    + V+  P    +     ++ G  + + C
Sbjct: 284 AVLKIFNIQYEDEGLYECEAENYKGKDKHQARVYVQASPEWVEHINDTEKDIGSDLYWPC 343

Query: 295 --RGNNIPQFSNTKIKWSFRSRDGRIFLPNVVSENRWELVNSNDTPETSFISIQGSLYKD 468
              G  IP      I+W          L N VS  + EL             IQG  ++D
Sbjct: 344 VATGKPIP-----TIRW----------LKNGVSFRKGEL------------RIQGLTFED 376

Query: 469 DGFYTCTAPDGS---QKTAELIIKRREDSLRLTITPETVKVRDGQPIIVECFSESEKTGE 639
            G Y C A +        AEL I     +  L    + +    G  +I+EC  ++     
Sbjct: 377 AGMYQCIAENAHGIIYANAELKIVASPPTFELNPMKKKILAAKGGRVIIECKPKAAP--- 433

Query: 640 PYGEPKFTMESGRSL 684
              +PKF+   G  L
Sbjct: 434 ---KPKFSWSKGTEL 445
>sp|P20241|NRG_DROME Neuroglian precursor
          Length = 1302

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 7/177 (3%)
 Frame = +1

Query: 130 ITLVNITPKNEGLYSCKVDN----IIKKANLIVVKEDPTLTINPERIIRNEGEPVEFHCR 297
           I ++N+   + G Y C   N    + K   L V  E PT++  P  +   +G  V   CR
Sbjct: 395 IRIINLVKGDTGNYGCNATNSLGYVYKDVYLNVQAEPPTISEAPAAVSTVDGRNVTIKCR 454

Query: 298 GNNIPQFSNTKIKWSFRSRDGRIFLPNVVSENRWELVNSNDTPETSFISIQGSLYKDDGF 477
            N  P+     +KW   S        N ++  R+ +  + D      + IQ   + D G 
Sbjct: 455 VNGSPK---PLVKWLRAS--------NWLTGGRYNVQANGD------LEIQDVTFSDAGK 497

Query: 478 YTCTAPD---GSQKTAELIIKRREDSLRLTITPETVKVRDGQPIIVECFSESEKTGE 639
           YTC A +     Q    L++K   +  R+T  P+  +V  GQ     C    + T E
Sbjct: 498 YTCYAQNKFGEIQADGSLVVK---EHTRITQEPQNYEVAAGQSATFRCNEAHDDTLE 551

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
 Frame = +1

Query: 163 GLYSCKVDNIIKKAN----LIVVKEDPTLTINPERIIRNEGEPVEFHCRGNNIPQFSNTK 330
           G Y+C V N +  A     ++ V   P  T  PE     E E V F CR   +P+    K
Sbjct: 313 GTYTCDVSNGVGNAQSFSIILNVNSVPYFTKEPEIATAAEDEEVVFECRAAGVPE---PK 369

Query: 331 IKWSFRSRDGRIFLPN---VVSENRWELVNSNDTPETSFISIQGSLYKDDGFYTCTAPDG 501
           I W    +      PN    V++N   ++N           ++G    D G Y C A + 
Sbjct: 370 ISWIHNGKPIEQSTPNPRRTVTDNTIRIIN----------LVKG----DTGNYGCNATNS 415

Query: 502 -SQKTAELIIKRREDSLRLTITPETVKVRDGQPIIVEC 612
                 ++ +  + +   ++  P  V   DG+ + ++C
Sbjct: 416 LGYVYKDVYLNVQAEPPTISEAPAAVSTVDGRNVTIKC 453
>sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-type (Cardiac MyBP-C) (C-protein,
            cardiac muscle isoform)
          Length = 1272

 Score = 48.1 bits (113), Expect = 4e-05
 Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 2/247 (0%)
 Frame = +1

Query: 16   EAESRGTNVEWFFNNEKLNSFNSE-TYNIYRNDRTYVSIITLVNITPKNEGLYSCKVDNI 192
            E  +   +V+W  N +++    S+  +    N R    I+T+ + +  ++  Y C V   
Sbjct: 385  EVANPDADVKWLKNGQEIQVSGSKYIFEAIGNKR----ILTINHCSLADDAAYECVVAEE 440

Query: 193  IKKANLIVVKEDPTLTINP-ERIIRNEGEPVEFHCRGNNIPQFSNTKIKWSFRSRDGRIF 369
             K    + VKE P L  +P E  +   GE VEF C  +         +KW    +DG   
Sbjct: 441  -KSFTELFVKEPPILITHPLEDQMVMVGERVEFECEVSE----EGATVKWE---KDG--- 489

Query: 370  LPNVVSENRWELVNSNDTPETSFISIQGSLYKDDGFYTCTAPDGSQKTAELIIKRREDSL 549
               +  E  ++     D  +  ++ I  S  +D G YT    +G    AELI++ ++  +
Sbjct: 490  -VELTREETFKYRFKKDGKK-QYLIINESTKEDSGHYTVKT-NGGVSVAELIVQEKKLEV 546

Query: 550  RLTITPETVKVRDGQPIIVECFSESEKTGEPYGEPKFTMESGRSLSLDPRLDQQNVGQSR 729
              +I   TVK RD      E   E+ K           +++G+ +  D R+   ++G+  
Sbjct: 547  YQSIADLTVKARDQAVFKCEVSDENVK--------GIWLKNGKEVVPDERIKISHIGRIH 598

Query: 730  IRLSIKD 750
             +L+I+D
Sbjct: 599  -KLTIED 604
>sp|P98159|NUDEL_DROME Serine protease nudel precursor
          Length = 2616

 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +1

Query: 772  NFKVECHAGI-QVKTATIFLENQCPPNYRRCNNG-ECQPSGKFCDGIPNCADASDEDPTL 945
            N + +CH G  + +T     + QC P   +C    +C P  KFCD +P+C D +DE PT+
Sbjct: 2328 NGRSDCHDGSDEEETKCRQQKQQCAPGEMKCRTSFKCVPKSKFCDHVPDCEDMTDE-PTI 2386

Query: 946  CN 951
            C+
Sbjct: 2387 CS 2388

 Score = 36.2 bits (82), Expect = 0.14
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
 Frame = +1

Query: 709  QNVGQSRIRLSIKDGLQTIDNNFKVECHAGIQVKTAT-----------------IFLENQ 837
            Q  GQS+     + G Q+  +N   +     Q  TA                  I   ++
Sbjct: 831  QGAGQSQTSSQQQQGGQSAFSNANFKMRHANQTNTANQQGQIIYASYAGLPQQPIQERSR 890

Query: 838  CP-PNYRRC-NNGECQPSGKFCDGIPNCADASDEDPTLC 948
            CP P+   C    EC P+ ++CD + +C+D SDE    C
Sbjct: 891  CPEPDQFSCFGQQECIPAARWCDNVVDCSDGSDESACTC 929

 Score = 36.2 bits (82), Expect = 0.14
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 856  RCNNGECQPSGKFCDGIPNCADASDEDPTLCNK 954
            RC  G C P    C+G  +C D SDE+ T C +
Sbjct: 2314 RCPLGTCLPQAAMCNGRSDCHDGSDEEETKCRQ 2346
>sp|Q06561|UNC52_CAEEL Basement membrane proteoglycan precursor (Perlecan homolog)
           (Uncoordinated protein 52)
          Length = 3375

 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 26/164 (15%)
 Frame = +1

Query: 547 LRLTITPETVKVRDGQPIIVECFSESE-----------KTGEPYGEPKFTMESGRSLSLD 693
           +++T+ P   +VRDG+ +  EC + +            + G P   P    +SG  L+++
Sbjct: 45  VQITVFPSEKEVRDGRDVSFECRARTSDNSVYPTVRWARVGGPL--PSSAHDSGGRLTIN 102

Query: 694 P-RLDQQ-----------NVGQSRIRLSIKD-GLQTIDNNFKVECHAGIQVKTATIFLEN 834
           P +L              N  ++R  LS+   G Q + N  +    AG            
Sbjct: 103 PVQLSDAGTYICVSDYNGNTVEARATLSVVSYGPQEVSNGLR---QAG------------ 147

Query: 835 QCPPNYRRCNNGECQPSGKFCDGIPNCADASDED--PTLCNKCD 960
           QC  + + C N EC  +   CDG P+C D SDE   P +   C+
Sbjct: 148 QCMADEKACGNNECVKNDYVCDGEPDCRDRSDEANCPAISRTCE 191

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 16/222 (7%)
 Frame = +1

Query: 106  NDRTYVSIITLVNITPKNEGLYSCKVDNIIKKAN---LIVVKE-----DPTLTINPERII 261
            N + Y   + L  +  +N G Y C    I + A    L+ + +      P   I+P  ++
Sbjct: 1177 NAKAYDGYLVLKGVEAENAGQYRCTATTITQYATDDALLTISKRISGRPPQPVIDPPHLV 1236

Query: 262  RNEGEPVEFHCRGNNIPQFSNTKIKWSFRSRDGRIFLPNVVSENRWELVNSNDTPETSFI 441
             NEGEP  F C    +P   + +I W      G   LP+ V +              + +
Sbjct: 1237 VNEGEPAAFRCW---VPGIPDCQITWHREQLGGP--LPHGVYQT------------GNAL 1279

Query: 442  SIQGSLYKDDGFYTCTAPD--GSQKTAELIIKRREDSLRLTITPETVKVRDGQPIIVECF 615
             I  S     G Y C+A +  G+ ++   +++ ++  +   + P    V   QP   +C+
Sbjct: 1280 KIPQSQLHHAGRYICSAANQYGTGQSPPAVLEVKKPVIPPKVDPIRQTVDRDQPARFKCW 1339

Query: 616  SESE-----KTGEPYGEP-KFTMESGRSLSLDPRLDQQNVGQ 723
                     +   P G P    ++  + +   PR   Q VGQ
Sbjct: 1340 VPGNSNVQLRWSRPGGAPLPSGVQEQQGILHIPRASDQEVGQ 1381

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 766 DNNFKVECHAGIQVKTATIFLENQCPPNYRRCNNG-ECQPSGKFCDGIPNCADASDE 933
           DN+ ++ C+A            + C P   +C++  +C PS   CDG  +C D SDE
Sbjct: 217 DNSDELNCNAKPS--------SSDCKPTEFQCHDRRQCVPSSFHCDGTNDCHDGSDE 265
>sp|O94856|NFASC_HUMAN Neurofascin precursor
          Length = 1240

 Score = 47.4 bits (111), Expect = 6e-05
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
 Frame = +1

Query: 40  VEWFFNNEKLNSFNSETYNIYRNDRTYVSIITLVNITPKNEGLYSCKVDNIIKKAN---L 210
           + WF N +  N  +   Y++Y N    + +I       +++G+Y+C   NI+ KA     
Sbjct: 462 LRWFKNGQGSN-LDGGNYHVYENGSLEIKMIR-----KEDQGIYTCVATNILGKAENQVR 515

Query: 211 IVVKEDPTLTINPERIIRNEGEPVEFHCRGNNIPQFSNTKIKWSFRSRDGRIFLPNVVSE 390
           + VK+   +   PE  +   G  V+  CR  + P   + K+  S+   D  +++ N + +
Sbjct: 516 LEVKDPTRIYRMPEDQVARRGTTVQLECRVKHDP---SLKLTVSWLKDDEPLYIGNRMKK 572

Query: 391 NRWELVNSNDTPETSFISIQGSLYKDDGFYTCTA 492
                       E   ++I G   +D G YTC A
Sbjct: 573 ------------EDDSLTIFGVAERDQGSYTCVA 594
>sp|Q63191|AEGP_RAT Apical endosomal glycoprotein precursor
          Length = 1216

 Score = 47.0 bits (110), Expect = 8e-05
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 835 QCPPNYRRCNNGECQPSGKFCDGIPNCADASDEDPTLCN 951
           +CP  +  C N  C    + CDG  NC D+SDEDP +C+
Sbjct: 230 RCPLGHHHCQNKACVEPHQLCDGEDNCGDSSDEDPLICS 268
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.316    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,986,460
Number of Sequences: 369166
Number of extensions: 2421491
Number of successful extensions: 7767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7690
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9952674160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)