Planaria EST Database


DrC_01438

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01438
         (923 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D4H1|EXOC2_MOUSE  Exocyst complex component 2 (Exocyst ...    30   7.3  
sp|Q8PES0|PLSB_XANAC  Glycerol-3-phosphate acyltransferase (...    30   9.6  
sp|Q8YHC2|SSB_BRUME  Single-strand binding protein (SSB) (He...    30   9.6  
sp|Q8P3E3|PLSB_XANCP  Glycerol-3-phosphate acyltransferase (...    30   9.6  
>sp|Q9D4H1|EXOC2_MOUSE Exocyst complex component 2 (Exocyst complex component Sec5)
          Length = 924

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
 Frame = -2

Query: 835 FTTPSKGRSTTIVPMKVTKQFARIKSIITNKKQLATTK*NW*CKSNWYTRACITTSFATT 656
           FT+ +   +  ++    T  F ++K  +TN K+ A  K      S  Y +  ++T F   
Sbjct: 160 FTSENFSAAWYLIENHSTTSFEQLKMAVTNLKRQANKKSE---GSLAYVKGGLSTFFEA- 215

Query: 655 RSNQDRQISVFINLQSPGTESLEPELSVKIISLLGGLH--SEGVPHEAHGGVARGSSARD 482
              QD   ++   L++ GTE +E  ++ K+ ++L      ++ +  E  G   +  S R+
Sbjct: 216 ---QDALSAIHQKLEADGTEKVEGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSTRN 272

Query: 481 VVVIRQPIQVQF 446
            + + Q  +  F
Sbjct: 273 ALNVLQRFKFLF 284
>sp|Q8PES0|PLSB_XANAC Glycerol-3-phosphate acyltransferase (GPAT)
          Length = 885

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -2

Query: 250 KQLIERLHVCGRLVVPGRPGISGAGRAVVEVLHQILAPRQLDRLHAPAGP 101
           +Q  ER ++   ++V   PG+ GAG   +E L Q  A R L  L+APA P
Sbjct: 768 QQAFERYYIAISVLVKNGPGVLGAGE--LESLCQQAAQR-LSLLYAPAAP 814
>sp|Q8YHC2|SSB_BRUME Single-strand binding protein (SSB) (Helix-destabilizing protein)
          Length = 168

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 251 AKGRGVSCGGNRRKISQSSGGGGE 322
           ++GR    GGNR ++S  SGGGG+
Sbjct: 121 SEGRSFGGGGNRNQMSDYSGGGGD 144
>sp|Q8P3E3|PLSB_XANCP Glycerol-3-phosphate acyltransferase (GPAT)
          Length = 886

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -2

Query: 250 KQLIERLHVCGRLVVPGRPGISGAGRAVVEVLHQILAPRQLDRLHAPAGP 101
           +Q  ER ++   ++V   PG+ GAG   +E L Q  A R L  L+APA P
Sbjct: 768 QQAFERYYIAISVLVKNGPGVLGAGE--LESLCQQAAQR-LSLLYAPAAP 814
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,566,010
Number of Sequences: 369166
Number of extensions: 2114303
Number of successful extensions: 6927
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6918
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)