Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_D03
(923 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D4H1|EXOC2_MOUSE Exocyst complex component 2 (Exocyst ... 30 7.3
sp|Q8PES0|PLSB_XANAC Glycerol-3-phosphate acyltransferase (... 30 9.6
sp|Q8YHC2|SSB_BRUME Single-strand binding protein (SSB) (He... 30 9.6
sp|Q8P3E3|PLSB_XANCP Glycerol-3-phosphate acyltransferase (... 30 9.6
>sp|Q9D4H1|EXOC2_MOUSE Exocyst complex component 2 (Exocyst complex component Sec5)
Length = 924
Score = 30.4 bits (67), Expect = 7.3
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Frame = -2
Query: 835 FTTPSKGRSTTIVPMKVTKQFARIKSIITNKKQLATTK*NW*CKSNWYTRACITTSFATT 656
FT+ + + ++ T F ++K +TN K+ A K S Y + ++T F
Sbjct: 160 FTSENFSAAWYLIENHSTTSFEQLKMAVTNLKRQANKKSE---GSLAYVKGGLSTFFEA- 215
Query: 655 RSNQDRQISVFINLQSPGTESLEPELSVKIISLLGGLH--SEGVPHEAHGGVARGSSARD 482
QD ++ L++ GTE +E ++ K+ ++L ++ + E G + S R+
Sbjct: 216 ---QDALSAIHQKLEADGTEKVEGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSTRN 272
Query: 481 VVVIRQPIQVQF 446
+ + Q + F
Sbjct: 273 ALNVLQRFKFLF 284
>sp|Q8PES0|PLSB_XANAC Glycerol-3-phosphate acyltransferase (GPAT)
Length = 885
Score = 30.0 bits (66), Expect = 9.6
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2
Query: 250 KQLIERLHVCGRLVVPGRPGISGAGRAVVEVLHQILAPRQLDRLHAPAGP 101
+Q ER ++ ++V PG+ GAG +E L Q A R L L+APA P
Sbjct: 768 QQAFERYYIAISVLVKNGPGVLGAGE--LESLCQQAAQR-LSLLYAPAAP 814
>sp|Q8YHC2|SSB_BRUME Single-strand binding protein (SSB) (Helix-destabilizing protein)
Length = 168
Score = 30.0 bits (66), Expect = 9.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 251 AKGRGVSCGGNRRKISQSSGGGGE 322
++GR GGNR ++S SGGGG+
Sbjct: 121 SEGRSFGGGGNRNQMSDYSGGGGD 144
>sp|Q8P3E3|PLSB_XANCP Glycerol-3-phosphate acyltransferase (GPAT)
Length = 886
Score = 30.0 bits (66), Expect = 9.6
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2
Query: 250 KQLIERLHVCGRLVVPGRPGISGAGRAVVEVLHQILAPRQLDRLHAPAGP 101
+Q ER ++ ++V PG+ GAG +E L Q A R L L+APA P
Sbjct: 768 QQAFERYYIAISVLVKNGPGVLGAGE--LESLCQQAAQR-LSLLYAPAAP 814
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,566,010
Number of Sequences: 369166
Number of extensions: 2114303
Number of successful extensions: 6927
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6918
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)