Planaria EST Database


DrC_01437

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01437
         (721 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41997|YKC6_CAEEL  Hypothetical protein B0280.6 in chromo...    60   4e-09
sp|O22340|TPSDA_ABIGR  Limonene synthase, chloroplast precur...    30   6.5  
sp|Q9Z8L2|MALQ_CHLPN  4-alpha-glucanotransferase (Amylomalta...    30   8.5  
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
          Length = 252

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 24/53 (45%), Positives = 37/53 (69%)
 Frame = +1

Query: 337 RPHVSNQTHAKLKELDWEILRHQPYSSDIAPADYHLFRSLEHHLCGHRFNNND 495
           +PHV+ +T  KL++L W +L H PYS D+AP DYHLF SL  ++   +F++ +
Sbjct: 158 KPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEE 210
>sp|O22340|TPSDA_ABIGR Limonene synthase, chloroplast precursor ((-)-(4S)-limonene
           synthase) (Agg-lim1)
          Length = 637

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
 Frame = +1

Query: 322 LQDNARPHVSNQTHAKLKELDWEILR---HQPYSS-----DIAPADYHLFRSLEHHLCGH 477
           ++++A  H++      ++EL+WE+LR     P SS     DI  A +H+++  +    G+
Sbjct: 561 IEEDALNHINAMISDAIRELNWELLRPDSKSPISSKKHAFDITRAFHHVYKYRD----GY 616

Query: 478 RFNNNDAQ 501
             +NN+ +
Sbjct: 617 TVSNNETK 624
>sp|Q9Z8L2|MALQ_CHLPN 4-alpha-glucanotransferase (Amylomaltase) (Disproportionating
           enzyme) (D-enzyme)
          Length = 526

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +1

Query: 436 YHLFRSLEHHLCGHRFNN-------NDAQPTLAYLFHRKL*YFITWEF*CFSR 573
           Y  FR+++HH+ G   NN        +  P L   FH ++ +F   +F C+ +
Sbjct: 166 YGTFRAIKHHMHGEPINNWPKSLTDQENFPDLTKKFHDEVLFFSYLQFLCYQQ 218
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,245,365
Number of Sequences: 369166
Number of extensions: 1676355
Number of successful extensions: 3281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3281
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)