Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C23
(721 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 60 4e-09
sp|O22340|TPSDA_ABIGR Limonene synthase, chloroplast precur... 30 6.5
sp|Q9Z8L2|MALQ_CHLPN 4-alpha-glucanotransferase (Amylomalta... 30 8.5
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 60.5 bits (145), Expect = 4e-09
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = +1
Query: 337 RPHVSNQTHAKLKELDWEILRHQPYSSDIAPADYHLFRSLEHHLCGHRFNNND 495
+PHV+ +T KL++L W +L H PYS D+AP DYHLF SL ++ +F++ +
Sbjct: 158 KPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEE 210
>sp|O22340|TPSDA_ABIGR Limonene synthase, chloroplast precursor ((-)-(4S)-limonene
synthase) (Agg-lim1)
Length = 637
Score = 30.0 bits (66), Expect = 6.5
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Frame = +1
Query: 322 LQDNARPHVSNQTHAKLKELDWEILR---HQPYSS-----DIAPADYHLFRSLEHHLCGH 477
++++A H++ ++EL+WE+LR P SS DI A +H+++ + G+
Sbjct: 561 IEEDALNHINAMISDAIRELNWELLRPDSKSPISSKKHAFDITRAFHHVYKYRD----GY 616
Query: 478 RFNNNDAQ 501
+NN+ +
Sbjct: 617 TVSNNETK 624
>sp|Q9Z8L2|MALQ_CHLPN 4-alpha-glucanotransferase (Amylomaltase) (Disproportionating
enzyme) (D-enzyme)
Length = 526
Score = 29.6 bits (65), Expect = 8.5
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +1
Query: 436 YHLFRSLEHHLCGHRFNN-------NDAQPTLAYLFHRKL*YFITWEF*CFSR 573
Y FR+++HH+ G NN + P L FH ++ +F +F C+ +
Sbjct: 166 YGTFRAIKHHMHGEPINNWPKSLTDQENFPDLTKKFHDEVLFFSYLQFLCYQQ 218
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,245,365
Number of Sequences: 369166
Number of extensions: 1676355
Number of successful extensions: 3281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3281
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)