Planaria EST Database


DrC_01425

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01425
         (799 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18011|IPAB_SHIFL  Invasin ipaB (62 kDa antigen)                37   0.062
sp|P55876|IF5_MAIZE  Eukaryotic translation initiation facto...    37   0.081
sp|Q03945|IPAB_SHIDY  Invasin ipaB (62 kDa antigen)                36   0.14 
sp|P78025|LON_MYCPN  ATP-dependent protease La                     33   0.90 
sp|P53850|YNZ4_YEAST  Hypothetical 46.2 kDa protein in SIP3-...    32   1.5  
sp|Q9HCH5|SYTL2_HUMAN  Synaptotagmin-like protein 2 (Exophil...    32   2.6  
sp|P36229|REP_BACSP  Protein rep (Replication protein)             31   3.4  
sp|Q8TDY2|RBCC1_HUMAN  RB1-inducible coiled-coil protein 1         31   4.5  
sp|Q7URW4|RPOC_RHOBA  DNA-directed RNA polymerase beta' chai...    31   4.5  
sp|Q9W596|FUTSC_DROME  Microtubule-associated protein futsch       31   4.5  
>sp|P18011|IPAB_SHIFL Invasin ipaB (62 kDa antigen)
          Length = 580

 Score = 37.0 bits (84), Expect = 0.062
 Identities = 26/82 (31%), Positives = 38/82 (46%)
 Frame = +1

Query: 424 ESNIGKAVMYLCKHPKETPENKKVATYLINEWSRPIFHLSSNYDGMTREERLERDKAISI 603
           E+ I +    L +   E+PE KK+        SR    L+   D   ++  L   K +SI
Sbjct: 155 ENKINQIQTRLSELDPESPEKKKL--------SREEIQLTIKKDAAVKDRTLIEQKTLSI 206

Query: 604 TRKLPDKSANIKKEIQEETAAS 669
             KL DKS  ++KEI   +A S
Sbjct: 207 HSKLTDKSMQLEKEIDSFSAFS 228
>sp|P55876|IF5_MAIZE Eukaryotic translation initiation factor 5 (eIF-5)
          Length = 451

 Score = 36.6 bits (83), Expect = 0.081
 Identities = 26/76 (34%), Positives = 39/76 (51%)
 Frame = +1

Query: 568 EERLERDKAISITRKLPDKSANIKKEIQEETAASKPGDEGWIPRATVPKQSNKDYIIRPP 747
           +ERL+  +A    +K   K A  KK  ++ TA      +G   +AT    S++D+   P 
Sbjct: 164 KERLKEGEAADEEQKKLKKDAK-KKGSKDSTA------KGLKKKATTATGSDEDHSSSPT 216

Query: 748 WKYDGVKRSFDDDDDD 795
             +DG K + DDDDDD
Sbjct: 217 RSHDGDKAAADDDDDD 232
>sp|Q03945|IPAB_SHIDY Invasin ipaB (62 kDa antigen)
          Length = 580

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 25/82 (30%), Positives = 38/82 (46%)
 Frame = +1

Query: 424 ESNIGKAVMYLCKHPKETPENKKVATYLINEWSRPIFHLSSNYDGMTREERLERDKAISI 603
           E+ I +    L +   ++PE KK+        SR    L+   D   ++  L   K +SI
Sbjct: 155 ENKINQIQTRLSELDPDSPEKKKL--------SREEIQLTIKKDAAVKDRTLIEQKTLSI 206

Query: 604 TRKLPDKSANIKKEIQEETAAS 669
             KL DKS  ++KEI   +A S
Sbjct: 207 HSKLTDKSMQLEKEIDSFSAFS 228
>sp|P78025|LON_MYCPN ATP-dependent protease La
          Length = 795

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 7/181 (3%)
 Frame = +1

Query: 121 LNDMDDRIAD-LMNKMRLAAVEDEELFHMGQPGIKKMQLLGAVKDMLNRSNIKEAL---- 285
           L+ + +R+ + L  ++R   ++   +  +G PG+ K  L  ++ + LN+  +K +L    
Sbjct: 350 LDKVKERVVEYLAVQLRTKKLKGPIMCLVGPPGVGKSSLAKSIAEALNKCFVKVSLGGVH 409

Query: 286 IESKFLVVMAAWLKPLPNHILPPLDIRTVLLKALLDFPTLSSDVMRESNIGKAVMYLCKH 465
            ES+       +L  +P  IL  + +R  ++  L  F     D M  SN G     L + 
Sbjct: 410 DESEIRGHRKTYLGSMPGRILKGM-VRAKVINPL--FLLDEIDKMTSSNQGYPSGALLEV 466

Query: 466 PKETPENKKVATYLINEW--SRPIFHLSSNYDGMTREERLERDKAISITRKLPDKSANIK 639
                 NK    Y+  ++  S+ +F  ++NY     E  L+R + I +T     +   I 
Sbjct: 467 LDPELNNKFSDNYVEEDYDLSKVMFVATANYIEDIPEALLDRMEVIELTSYTEQEKLQIT 526

Query: 640 K 642
           K
Sbjct: 527 K 527
>sp|P53850|YNZ4_YEAST Hypothetical 46.2 kDa protein in SIP3-MRPL30 intergenic region
          Length = 401

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 7/196 (3%)
 Frame = +1

Query: 49  EEVVEKQRIEKRLNRPKKRNDVDFLNDMDDRIAD---LMNKMRLAAVEDEELFHMGQPGI 219
           +E  E++ +   L +  K  D++ +   ++ + D   L+ +  L+AVED ++F    P  
Sbjct: 103 KEKEEEKVVSIPLIQNLKNEDIESIKCRNNNLLDGKKLLLEAELSAVEDNQIFSSSFPED 162

Query: 220 KKMQL---LGAVKDMLNRSNIKEALIESKFLVVMAAWLKPLPNHILPPLDIRTVLLKALL 390
           KK+ L   L + + ++ +  ++E  + SKF               LPP+     LL  + 
Sbjct: 163 KKLSLQSCLSSKEQIIKKLQVREEYM-SKFK--------------LPPMLFSDELLTEVE 207

Query: 391 DFPTLSSDVMRESNIGKAVMYLCKHPKETPENKKVATYLINEWSR-PIFHLSSNYDGMTR 567
            F  +  D++     GK         K   +N + A   ++E+ +  +   ++ + G+ R
Sbjct: 208 PFMPIVMDILE----GKISSVYYFEAKNAFKNSQKAYLSVDEFRKLNLNKFTAGFYGLKR 263

Query: 568 EERLERDKAISITRKL 615
           + R+  + A    R L
Sbjct: 264 QLRVGEEIAKRYKRAL 279
>sp|Q9HCH5|SYTL2_HUMAN Synaptotagmin-like protein 2 (Exophilin-4)
          Length = 895

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = +1

Query: 325 KPLPNHILPPLDIRTVLLKALLDFPTLSSDVMRESNIGKAVMYLCKHPKETPENKKVATY 504
           +P+P   LP      + +K  LD P L     R S++   V   C    +T    +  T 
Sbjct: 742 EPVPGKKLPTTGEVHIWVKECLDLPLL-----RGSHLNSFVK--CTILPDTSRKSRQKTR 794

Query: 505 LINEWSRPIFHLSSNYDGMTREERLE 582
            + + + PIF+ +  YDG   E+ +E
Sbjct: 795 AVGKTTNPIFNHTMVYDGFRPEDLME 820
>sp|P36229|REP_BACSP Protein rep (Replication protein)
          Length = 307

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
 Frame = +1

Query: 319 WLKPLPNHILPPLDIRTVLLKALLDFPTLSSDVMRESNIGKAVMYLCKHP---------- 468
           W K +     P +DIR V  KA +D   + +DV       KAV+ + K+P          
Sbjct: 171 WKKAMKLDYTPIVDIRRVKGKAKIDAELIENDVREAMMEQKAVLEISKYPVKDTDVVRGN 230

Query: 469 KETPENKKVATYL 507
           K T +N     YL
Sbjct: 231 KVTEDNLNTVLYL 243
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1
          Length = 1594

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
 Frame = +1

Query: 37   LRCFEEVVEKQRIEKRLNRPKKRNDVDFLNDMDDRIADLMNKM-------------RLAA 177
            L C EEV++ +  E  L + +K   +   N+ D ++ ++ N M             R   
Sbjct: 899  LVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIV 958

Query: 178  VEDEELFHMGQPGIKKMQLLGAVKDMLNRSNIKE 279
            +ED +  H+     +K+QLL A    L +S++KE
Sbjct: 959  LEDLKKLHVEND--EKLQLLRAELQSLEQSHLKE 990
>sp|Q7URW4|RPOC_RHOBA DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1429

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 23/89 (25%), Positives = 45/89 (50%)
 Frame = +1

Query: 136 DRIADLMNKMRLAAVEDEELFHMGQPGIKKMQLLGAVKDMLNRSNIKEALIESKFLVVMA 315
           + + DL+NK+ L  + D+    + + G K+ +     KD++NR  I E++ +S       
Sbjct: 182 EAVRDLLNKLDLVTLSDQLRVDLAETGSKQKK-----KDLINRLKIVESIRDSD---NRP 233

Query: 316 AWLKPLPNHILPPLDIRTVLLKALLDFPT 402
            W+      ++PP D+R ++L    +F T
Sbjct: 234 EWMVLDVIPVIPP-DLRPLVLLDSGNFAT 261
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
          Length = 5412

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +1

Query: 394  FPTLSSDVMRESNIGKAVMYLCKHPKETPENKKVATYLINEWSRPIFHLSSNYDGMTREE 573
            FP +S +V R +++ ++V        E  ++K+ +  +  E SRP     S  D   + +
Sbjct: 3320 FPLVSKEVSRPASVAESVK------DEAEKSKEESPLMSKEASRPASVAGSVKDEAEKSK 3373

Query: 574  RLERDKAISITRKLPDKS----ANIKKEIQEETAASK 672
               R ++++    LP K     A++ + +++E   SK
Sbjct: 3374 EESRRESVAEKSPLPSKEASRPASVAESVKDEADKSK 3410
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.316    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,446,694
Number of Sequences: 369166
Number of extensions: 1605005
Number of successful extensions: 5461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5453
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)