Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O01
(799 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18011|IPAB_SHIFL Invasin ipaB (62 kDa antigen) 37 0.062
sp|P55876|IF5_MAIZE Eukaryotic translation initiation facto... 37 0.081
sp|Q03945|IPAB_SHIDY Invasin ipaB (62 kDa antigen) 36 0.14
sp|P78025|LON_MYCPN ATP-dependent protease La 33 0.90
sp|P53850|YNZ4_YEAST Hypothetical 46.2 kDa protein in SIP3-... 32 1.5
sp|Q9HCH5|SYTL2_HUMAN Synaptotagmin-like protein 2 (Exophil... 32 2.6
sp|P36229|REP_BACSP Protein rep (Replication protein) 31 3.4
sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 31 4.5
sp|Q7URW4|RPOC_RHOBA DNA-directed RNA polymerase beta' chai... 31 4.5
sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch 31 4.5
>sp|P18011|IPAB_SHIFL Invasin ipaB (62 kDa antigen)
Length = 580
Score = 37.0 bits (84), Expect = 0.062
Identities = 26/82 (31%), Positives = 38/82 (46%)
Frame = +1
Query: 424 ESNIGKAVMYLCKHPKETPENKKVATYLINEWSRPIFHLSSNYDGMTREERLERDKAISI 603
E+ I + L + E+PE KK+ SR L+ D ++ L K +SI
Sbjct: 155 ENKINQIQTRLSELDPESPEKKKL--------SREEIQLTIKKDAAVKDRTLIEQKTLSI 206
Query: 604 TRKLPDKSANIKKEIQEETAAS 669
KL DKS ++KEI +A S
Sbjct: 207 HSKLTDKSMQLEKEIDSFSAFS 228
>sp|P55876|IF5_MAIZE Eukaryotic translation initiation factor 5 (eIF-5)
Length = 451
Score = 36.6 bits (83), Expect = 0.081
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +1
Query: 568 EERLERDKAISITRKLPDKSANIKKEIQEETAASKPGDEGWIPRATVPKQSNKDYIIRPP 747
+ERL+ +A +K K A KK ++ TA +G +AT S++D+ P
Sbjct: 164 KERLKEGEAADEEQKKLKKDAK-KKGSKDSTA------KGLKKKATTATGSDEDHSSSPT 216
Query: 748 WKYDGVKRSFDDDDDD 795
+DG K + DDDDDD
Sbjct: 217 RSHDGDKAAADDDDDD 232
>sp|Q03945|IPAB_SHIDY Invasin ipaB (62 kDa antigen)
Length = 580
Score = 35.8 bits (81), Expect = 0.14
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +1
Query: 424 ESNIGKAVMYLCKHPKETPENKKVATYLINEWSRPIFHLSSNYDGMTREERLERDKAISI 603
E+ I + L + ++PE KK+ SR L+ D ++ L K +SI
Sbjct: 155 ENKINQIQTRLSELDPDSPEKKKL--------SREEIQLTIKKDAAVKDRTLIEQKTLSI 206
Query: 604 TRKLPDKSANIKKEIQEETAAS 669
KL DKS ++KEI +A S
Sbjct: 207 HSKLTDKSMQLEKEIDSFSAFS 228
>sp|P78025|LON_MYCPN ATP-dependent protease La
Length = 795
Score = 33.1 bits (74), Expect = 0.90
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 7/181 (3%)
Frame = +1
Query: 121 LNDMDDRIAD-LMNKMRLAAVEDEELFHMGQPGIKKMQLLGAVKDMLNRSNIKEAL---- 285
L+ + +R+ + L ++R ++ + +G PG+ K L ++ + LN+ +K +L
Sbjct: 350 LDKVKERVVEYLAVQLRTKKLKGPIMCLVGPPGVGKSSLAKSIAEALNKCFVKVSLGGVH 409
Query: 286 IESKFLVVMAAWLKPLPNHILPPLDIRTVLLKALLDFPTLSSDVMRESNIGKAVMYLCKH 465
ES+ +L +P IL + +R ++ L F D M SN G L +
Sbjct: 410 DESEIRGHRKTYLGSMPGRILKGM-VRAKVINPL--FLLDEIDKMTSSNQGYPSGALLEV 466
Query: 466 PKETPENKKVATYLINEW--SRPIFHLSSNYDGMTREERLERDKAISITRKLPDKSANIK 639
NK Y+ ++ S+ +F ++NY E L+R + I +T + I
Sbjct: 467 LDPELNNKFSDNYVEEDYDLSKVMFVATANYIEDIPEALLDRMEVIELTSYTEQEKLQIT 526
Query: 640 K 642
K
Sbjct: 527 K 527
>sp|P53850|YNZ4_YEAST Hypothetical 46.2 kDa protein in SIP3-MRPL30 intergenic region
Length = 401
Score = 32.3 bits (72), Expect = 1.5
Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 7/196 (3%)
Frame = +1
Query: 49 EEVVEKQRIEKRLNRPKKRNDVDFLNDMDDRIAD---LMNKMRLAAVEDEELFHMGQPGI 219
+E E++ + L + K D++ + ++ + D L+ + L+AVED ++F P
Sbjct: 103 KEKEEEKVVSIPLIQNLKNEDIESIKCRNNNLLDGKKLLLEAELSAVEDNQIFSSSFPED 162
Query: 220 KKMQL---LGAVKDMLNRSNIKEALIESKFLVVMAAWLKPLPNHILPPLDIRTVLLKALL 390
KK+ L L + + ++ + ++E + SKF LPP+ LL +
Sbjct: 163 KKLSLQSCLSSKEQIIKKLQVREEYM-SKFK--------------LPPMLFSDELLTEVE 207
Query: 391 DFPTLSSDVMRESNIGKAVMYLCKHPKETPENKKVATYLINEWSR-PIFHLSSNYDGMTR 567
F + D++ GK K +N + A ++E+ + + ++ + G+ R
Sbjct: 208 PFMPIVMDILE----GKISSVYYFEAKNAFKNSQKAYLSVDEFRKLNLNKFTAGFYGLKR 263
Query: 568 EERLERDKAISITRKL 615
+ R+ + A R L
Sbjct: 264 QLRVGEEIAKRYKRAL 279
>sp|Q9HCH5|SYTL2_HUMAN Synaptotagmin-like protein 2 (Exophilin-4)
Length = 895
Score = 31.6 bits (70), Expect = 2.6
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +1
Query: 325 KPLPNHILPPLDIRTVLLKALLDFPTLSSDVMRESNIGKAVMYLCKHPKETPENKKVATY 504
+P+P LP + +K LD P L R S++ V C +T + T
Sbjct: 742 EPVPGKKLPTTGEVHIWVKECLDLPLL-----RGSHLNSFVK--CTILPDTSRKSRQKTR 794
Query: 505 LINEWSRPIFHLSSNYDGMTREERLE 582
+ + + PIF+ + YDG E+ +E
Sbjct: 795 AVGKTTNPIFNHTMVYDGFRPEDLME 820
>sp|P36229|REP_BACSP Protein rep (Replication protein)
Length = 307
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Frame = +1
Query: 319 WLKPLPNHILPPLDIRTVLLKALLDFPTLSSDVMRESNIGKAVMYLCKHP---------- 468
W K + P +DIR V KA +D + +DV KAV+ + K+P
Sbjct: 171 WKKAMKLDYTPIVDIRRVKGKAKIDAELIENDVREAMMEQKAVLEISKYPVKDTDVVRGN 230
Query: 469 KETPENKKVATYL 507
K T +N YL
Sbjct: 231 KVTEDNLNTVLYL 243
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1
Length = 1594
Score = 30.8 bits (68), Expect = 4.5
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Frame = +1
Query: 37 LRCFEEVVEKQRIEKRLNRPKKRNDVDFLNDMDDRIADLMNKM-------------RLAA 177
L C EEV++ + E L + +K + N+ D ++ ++ N M R
Sbjct: 899 LVCLEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIV 958
Query: 178 VEDEELFHMGQPGIKKMQLLGAVKDMLNRSNIKE 279
+ED + H+ +K+QLL A L +S++KE
Sbjct: 959 LEDLKKLHVEND--EKLQLLRAELQSLEQSHLKE 990
>sp|Q7URW4|RPOC_RHOBA DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1429
Score = 30.8 bits (68), Expect = 4.5
Identities = 23/89 (25%), Positives = 45/89 (50%)
Frame = +1
Query: 136 DRIADLMNKMRLAAVEDEELFHMGQPGIKKMQLLGAVKDMLNRSNIKEALIESKFLVVMA 315
+ + DL+NK+ L + D+ + + G K+ + KD++NR I E++ +S
Sbjct: 182 EAVRDLLNKLDLVTLSDQLRVDLAETGSKQKK-----KDLINRLKIVESIRDSD---NRP 233
Query: 316 AWLKPLPNHILPPLDIRTVLLKALLDFPT 402
W+ ++PP D+R ++L +F T
Sbjct: 234 EWMVLDVIPVIPP-DLRPLVLLDSGNFAT 261
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
Length = 5412
Score = 30.8 bits (68), Expect = 4.5
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 394 FPTLSSDVMRESNIGKAVMYLCKHPKETPENKKVATYLINEWSRPIFHLSSNYDGMTREE 573
FP +S +V R +++ ++V E ++K+ + + E SRP S D + +
Sbjct: 3320 FPLVSKEVSRPASVAESVK------DEAEKSKEESPLMSKEASRPASVAGSVKDEAEKSK 3373
Query: 574 RLERDKAISITRKLPDKS----ANIKKEIQEETAASK 672
R ++++ LP K A++ + +++E SK
Sbjct: 3374 EESRRESVAEKSPLPSKEASRPASVAESVKDEADKSK 3410
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,446,694
Number of Sequences: 369166
Number of extensions: 1605005
Number of successful extensions: 5461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5453
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)