Planaria EST Database


DrC_01421

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01421
         (628 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NDV7|TNR6A_HUMAN  Trinucleotide repeat-containing gene ...    43   8e-04
sp|Q9JL19|NCOA6_MOUSE  Nuclear receptor coactivator 6 (Ampli...    34   0.27 
sp|Q14686|NCOA6_HUMAN  Nuclear receptor coactivator 6 (Ampli...    33   0.46 
sp|Q03466|EBS1_YEAST  Protein EBS1 (EST1-like BCY1 suppresso...    33   0.60 
sp|P13468|K10_DROME  DNA-binding protein K10 (Female sterile...    33   0.60 
sp|P05453|ERF2_YEAST  Eukaryotic peptide chain release facto...    33   0.78 
sp|P40356|MED3_YEAST  RNA polymerase II mediator complex sub...    33   0.78 
sp|Q60865|GP137_MOUSE  GPI-anchored protein p137 (p137GPI)         33   0.78 
sp|Q95XZ5|NPBL_CAEEL  Nipped-B-like protein pqn-85 (Prion-li...    32   1.0  
sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            32   1.0  
>sp|Q8NDV7|TNR6A_HUMAN Trinucleotide repeat-containing gene 6A protein (CAG repeat protein
           26) (Glycin-tryptophan protein of 182 kDa) (GW182
           autoantigen) (GW1 protein) (EMSY interactor protein)
          Length = 1962

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
 Frame = +2

Query: 113 PGTRSQSNNLTSVNWGNSSDKSMFNANQIKPSGVNWNAPVNITASPQLQMQQPVGTGNSG 292
           P ++S+S+N     WG  S  S    N    +  + +    +  +  L ++ PVG+G+SG
Sbjct: 331 PESKSESSNNRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGSSG 390

Query: 293 YGIQMTSCMQYMPANYNQSYQ---NQMHPQFG---------VGYNNNMNF-GQPLNPQNP 433
             IQ ++  Q MP N + + +      H  +G         V     ++F GQP N    
Sbjct: 391 INIQCSTIGQ-MPNNQSINSKVSGGSTHGTWGSLQETCESEVSGTQKVSFSGQPQNITTE 449

Query: 434 FLSQNNTQNFMPFQSQNQSTYPN 502
               NNT NFM     N  +  N
Sbjct: 450 MTGPNNTTNFMTSSLPNSGSVQN 472
>sp|Q9JL19|NCOA6_MOUSE Nuclear receptor coactivator 6 (Amplified in breast cancer-3
           protein) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator-2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (PPAR-interacting protein) (Nuclear
           receptor-activating protein, 250 kDa) (Nuclear receptor
           coactivator RAP250) (NRC) (Thyroid hormone receptor
           binding protein)
          Length = 2067

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
 Frame = +2

Query: 125 SQSNNLTSVNWGNSSDKSMFNANQIKPSGVNWNAPVNITASPQLQMQQPVGTGNSGYGIQ 304
           SQ  +    N+   S+   F A Q+K  G+    P  +       +QQP  T N      
Sbjct: 384 SQQASQAHTNFPQMSNPGQFTAPQMK--GLQ-GGPSRVPTP----LQQPHLT-NKSPASS 435

Query: 305 MTSCMQYMPAN---YNQSYQNQMHPQFGVGYNNNMNFGQPLNP--QNPFLSQNNTQ-NFM 466
            +S  Q  PA+    NQ+ Q QM P+       +  F QP++   +NP + Q N   NFM
Sbjct: 436 PSSFQQGSPASSPTVNQT-QQQMGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFM 494

Query: 467 PFQSQNQSTYPNQLHSQFGSL 529
             Q Q  +  P  LH   G +
Sbjct: 495 VMQQQPPNQGPQSLHPGLGGM 515
>sp|Q14686|NCOA6_HUMAN Nuclear receptor coactivator 6 (Amplified in breast cancer-3
           protein) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator-2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (PPAR-interacting protein) (PRIP) (Nuclear
           receptor-activating protein, 250 kDa) (Nuclear receptor
           coactivator RAP250) (NRC RAP250) (Thyroid hormone
           receptor-binding protein)
          Length = 2063

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 5/140 (3%)
 Frame = +2

Query: 125 SQSNNLTSVNWGNSSDKSMFNANQIKPSGVNWNAPVNITASPQLQMQQPVGTGNSGYGIQ 304
           SQ  +    N+   S+   F A Q+K      +        P L  + P  + +S    Q
Sbjct: 380 SQQASQAHTNFPQMSNPGQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSS---FQ 436

Query: 305 MTSCMQYMPANYNQSYQNQMHPQFGVGYNNNM--NFGQPLNP--QNPFLSQNNTQ-NFMP 469
             S       N  Q       PQ     NN +   F QP++   +NP + Q N   NFM 
Sbjct: 437 QGSPASSPTVNQTQQQMGPRPPQ-----NNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMV 491

Query: 470 FQSQNQSTYPNQLHSQFGSL 529
            Q Q  +  P  LH   G +
Sbjct: 492 MQQQPPNQGPQSLHPGLGGM 511
>sp|Q03466|EBS1_YEAST Protein EBS1 (EST1-like BCY1 suppressor 1)
          Length = 884

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
 Frame = +2

Query: 104  NIGPGTRSQSNNLTSVNWGNSSDKSMFNANQIKPS---------------GVNWNAPVNI 238
            NI PG  +      +++  NS+D+S F+ N I  S               GVN   P N 
Sbjct: 691  NISPGYSN-----AAISSSNSTDESSFDLNNILSSMQQKHAEKSFAKSMQGVNEQIPAND 745

Query: 239  TASPQLQMQQPVGTGNSGYGIQMTSCMQYMPANYNQSYQNQMHPQFGVGYNNNMNFGQPL 418
                  Q Q+P+  G   Y  Q  S M    ++ N +YQN   P               +
Sbjct: 746  VCH---QAQRPMQGGL--YSSQQPSSM----SSLNSAYQNASMPPSA----------SMV 786

Query: 419  NPQNPFLSQNNTQNFMPFQSQN 484
            +   PFL+Q     F P+ +QN
Sbjct: 787  SYPYPFLNQQGQGVFPPYNAQN 808
>sp|P13468|K10_DROME DNA-binding protein K10 (Female sterile protein K10)
          Length = 463

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 25/170 (14%)
 Frame = +2

Query: 86  YLAGNLNIGPGTRSQSNNLTSVNWGNSSDKSMFNANQIK--PSGVNWNAPV-----NITA 244
           + +G +N GPG     N +      N +++ MF+++Q+   P  +++++P      N   
Sbjct: 62  FRSGKINSGPGGNGNGNRV------NGNNQMMFSSSQMPSDPLYIDFSSPPPGFKHNQVG 115

Query: 245 SPQLQ--------------MQQPVGTGNSGYGI----QMTSCMQYMPANYNQSYQNQMHP 370
           SP+ +               QQP       +      Q  S  Q    N NQ  Q  + P
Sbjct: 116 SPKKKSMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQQQHPSPNQQQHPNSNQ--QQHLSP 173

Query: 371 QFGVGYNNNMNFGQPLNPQNPFLSQNNTQNFMPFQSQNQSTYPNQLHSQF 520
               G  NN N       Q PF +Q N  ++      N    PNQ+   F
Sbjct: 174 NQQQGKMNNQNNNHMNQSQQPFNNQMNGSDWQRHPGNN----PNQIRGGF 219
>sp|P05453|ERF2_YEAST Eukaryotic peptide chain release factor GTP-binding subunit (ERF2)
           (Translation release factor 3) (ERF3) (ERF-3)
           (Omnipotent suppressor protein 2) (G1 to S phase
           transition protein 1)
          Length = 685

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +2

Query: 284 NSGYGIQMTSCMQYMPANYNQSYQNQMHPQFGVGYNNNMNFGQPLNP-QNPFLSQNNTQN 460
           ++GY  Q      Y   N    YQ Q +PQ G G   N N+   L   Q  F  Q+   +
Sbjct: 66  DAGYQQQYNPQGGYQQYNPQGGYQQQFNPQGGRGNYKNFNYNNNLQGYQAGFQPQSQGMS 125

Query: 461 FMPFQSQNQSTYP 499
              FQ Q +   P
Sbjct: 126 LNDFQKQQKQAAP 138
>sp|P40356|MED3_YEAST RNA polymerase II mediator complex subunit 3 (Poly-glutamine domain
           protein 1) (Hyper-recombination suppressor protein 1)
          Length = 397

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 27/96 (28%), Positives = 33/96 (34%)
 Frame = +2

Query: 203 PSGVNWNAPVNITASPQLQMQQPVGTGNSGYGIQMTSCMQYMPANYNQSYQNQMHPQFGV 382
           PS +N  +P N+  +P   M  P+G               Y     NQ  Q  M    G 
Sbjct: 260 PSMINSVSPTNVMGTPLTNMMSPMGNA-------------YSMGAQNQGGQVSMSQFNGS 306

Query: 383 GYNNNMNFGQPLNPQNPFLSQNNTQNFMPFQSQNQS 490
           G  +N N     N   P  SQ N  N  P    N S
Sbjct: 307 GNGSNPNTNTNSN-NTPLQSQLNLNNLTPANILNMS 341
>sp|Q60865|GP137_MOUSE GPI-anchored protein p137 (p137GPI)
          Length = 656

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
 Frame = +2

Query: 20  YQPQ-VNSKAPEIQPMALDDKLAYLAGNLNIGPGTRSQSNNLTSVNWGNSSDKSMFNANQ 196
           YQP     + P+ +PM        +   +++     + S++L +     +S   +F A  
Sbjct: 396 YQPSHATEQRPQKEPMD------QIQATISLNTDQTTASSSLPA-----ASQPQVFQAGT 444

Query: 197 IKP---SGVNWNAPVNITASPQLQMQQPVGTGNSGYGIQMTSCMQYMPANYNQSYQNQMH 367
            KP   SG+N NA    +      M  PV   N    ++  S  Q   A YNQS+ +Q H
Sbjct: 445 SKPLHSSGINVNAAPFQSMQTVFNMNAPVPPANEPETLKQQSQYQ---ATYNQSFSSQPH 501
>sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 (Prion-like-(Q/n-rich)-domain-bearing
           protein 85) (SCC2 homolog)
          Length = 2203

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
 Frame = +2

Query: 215 NWNAPVNITASPQLQMQQPVGTGNSGYGIQM---------TSCMQYMPANYNQSYQNQMH 367
           N    +N T +P  Q   PV T   G+G QM          +  QY P    Q Y N   
Sbjct: 5   NLQNSLNGTGNPNFQ---PVQTNAGGFGHQMAQTGAAAAAAATGQYNPMLLQQQYLNF-- 59

Query: 368 PQFGVGYNNNM-NFGQPLNPQNPFLSQNNTQNFMPFQSQNQ 487
             FG+ YNN + +F      Q  +L Q   Q       Q Q
Sbjct: 60  -GFGMNYNNQLFDFQAQQQQQQQYLMQQQQQQQQLHHQQQQ 99
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 3/127 (2%)
 Frame = +2

Query: 98  NLNIGPGTRSQSNNLTSVNWGNSSDKSMFNANQIKPSGVNWNAPVNITASPQLQMQQPVG 277
           N N    T + +NN+ + N  N+++ +  NAN    +  N     N   +P     Q   
Sbjct: 318 NNNTNNNTNNNNNNINNNN--NNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQNNN 375

Query: 278 TGNSGYGIQMTSCMQYMPANYNQSYQNQMHPQFG-VGYNNNMNFGQPLNP--QNPFLSQN 448
             N+      T+     P   N +         G +G  + ++   P NP  Q  F    
Sbjct: 376 NNNTSNNSNTTTATTTAPGGNNLTNSLNNAGNLGNLGRVSGLHSSDPNNPNAQKSFPDST 435

Query: 449 NTQNFMP 469
           NT +F P
Sbjct: 436 NTMDFQP 442
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,760,947
Number of Sequences: 369166
Number of extensions: 1503901
Number of successful extensions: 3940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3910
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)