Planaria EST Database


DrC_01419

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01419
         (881 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52029|G6PI_DROME  Glucose-6-phosphate isomerase (GPI) (P...    31   5.2  
sp|P52031|G6PI_DROYA  Glucose-6-phosphate isomerase (GPI) (P...    31   5.2  
sp|P52030|G6PI_DROSI  Glucose-6-phosphate isomerase (GPI) (P...    31   5.2  
sp|Q10336|MCP6_SCHPO  Meiotic coiled-coil protein 6                30   8.9  
sp|O74562|SEC8_SCHPO  Exocyst complex component sec8               30   8.9  
>sp|P52029|G6PI_DROME Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
           (PGI) (Phosphohexose isomerase) (PHI)
          Length = 558

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
 Frame = -2

Query: 607 FIRCSERDSVIDIIKRMNYEKASFALISQTYTKQ-CVHSIISSKELL-------DYIMKH 452
           F+   +   + +++K++NYE   F + S+T+T Q  + +  S+K  L       + + KH
Sbjct: 187 FVSNIDGTHLAEVLKKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKH 246

Query: 451 DHNRSPpreSV--FAIDKTKCF 392
               S  +E V  F ID T  F
Sbjct: 247 FVALSTNKEKVTEFGIDSTNMF 268
>sp|P52031|G6PI_DROYA Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
           (PGI) (Phosphohexose isomerase) (PHI)
          Length = 558

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
 Frame = -2

Query: 607 FIRCSERDSVIDIIKRMNYEKASFALISQTYTKQ-CVHSIISSKELL-------DYIMKH 452
           F+   +   + +++K++NYE   F + S+T+T Q  + +  S+K  L       + + KH
Sbjct: 187 FVSNIDGTHLAEVLKKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKH 246

Query: 451 DHNRSPpreSV--FAIDKTKCF 392
               S  +E V  F ID T  F
Sbjct: 247 FVALSTNKEKVTEFGIDSTNMF 268
>sp|P52030|G6PI_DROSI Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
           (PGI) (Phosphohexose isomerase) (PHI)
          Length = 558

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
 Frame = -2

Query: 607 FIRCSERDSVIDIIKRMNYEKASFALISQTYTKQ-CVHSIISSKELL-------DYIMKH 452
           F+   +   + +++K++NYE   F + S+T+T Q  + +  S+K  L       + + KH
Sbjct: 187 FVSNIDGTHLAEVLKKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKH 246

Query: 451 DHNRSPpreSV--FAIDKTKCF 392
               S  +E V  F ID T  F
Sbjct: 247 FVALSTNKEKVTEFGIDSTNMF 268
>sp|Q10336|MCP6_SCHPO Meiotic coiled-coil protein 6
          Length = 327

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = -2

Query: 541 SFALISQTYTKQCVHSIISSKELLDYIMKHDHNRSPpreSVFAIDKTKCFRTISCCE 371
           SF  I QT  K+  +   ++K+ L  + +   NR+PP  S F+++ +  ++ +SC E
Sbjct: 265 SFQQICQTLRKRLENDSSTTKQRLSKLEEIIRNRAPPSYS-FSLNCSHTYQPVSCVE 320
>sp|O74562|SEC8_SCHPO Exocyst complex component sec8
          Length = 1088

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -2

Query: 580  VIDIIKRMNYEKASFALISQTYTKQCVHSIISSKELLDYIMKHDHNRSPpreSVFAIDKT 401
            V D ++R+ ++  +  LI      Q +HSI  S  L DY++++   R  P  S+ A++ T
Sbjct: 879  VFDSLQRLQFD--ALLLIRMEVRLQYIHSINQSVNLPDYVVEY---RGRPDASIMALNST 933
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,029,954
Number of Sequences: 369166
Number of extensions: 1610498
Number of successful extensions: 3309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3309
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)