Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_M18
(881 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52029|G6PI_DROME Glucose-6-phosphate isomerase (GPI) (P... 31 5.2
sp|P52031|G6PI_DROYA Glucose-6-phosphate isomerase (GPI) (P... 31 5.2
sp|P52030|G6PI_DROSI Glucose-6-phosphate isomerase (GPI) (P... 31 5.2
sp|Q10336|MCP6_SCHPO Meiotic coiled-coil protein 6 30 8.9
sp|O74562|SEC8_SCHPO Exocyst complex component sec8 30 8.9
>sp|P52029|G6PI_DROME Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
(PGI) (Phosphohexose isomerase) (PHI)
Length = 558
Score = 30.8 bits (68), Expect = 5.2
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = -2
Query: 607 FIRCSERDSVIDIIKRMNYEKASFALISQTYTKQ-CVHSIISSKELL-------DYIMKH 452
F+ + + +++K++NYE F + S+T+T Q + + S+K L + + KH
Sbjct: 187 FVSNIDGTHLAEVLKKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKH 246
Query: 451 DHNRSPpreSV--FAIDKTKCF 392
S +E V F ID T F
Sbjct: 247 FVALSTNKEKVTEFGIDSTNMF 268
>sp|P52031|G6PI_DROYA Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
(PGI) (Phosphohexose isomerase) (PHI)
Length = 558
Score = 30.8 bits (68), Expect = 5.2
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = -2
Query: 607 FIRCSERDSVIDIIKRMNYEKASFALISQTYTKQ-CVHSIISSKELL-------DYIMKH 452
F+ + + +++K++NYE F + S+T+T Q + + S+K L + + KH
Sbjct: 187 FVSNIDGTHLAEVLKKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKH 246
Query: 451 DHNRSPpreSV--FAIDKTKCF 392
S +E V F ID T F
Sbjct: 247 FVALSTNKEKVTEFGIDSTNMF 268
>sp|P52030|G6PI_DROSI Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
(PGI) (Phosphohexose isomerase) (PHI)
Length = 558
Score = 30.8 bits (68), Expect = 5.2
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = -2
Query: 607 FIRCSERDSVIDIIKRMNYEKASFALISQTYTKQ-CVHSIISSKELL-------DYIMKH 452
F+ + + +++K++NYE F + S+T+T Q + + S+K L + + KH
Sbjct: 187 FVSNIDGTHLAEVLKKVNYETTLFIVASKTFTTQETITNATSAKTWLLEHSKEPESVAKH 246
Query: 451 DHNRSPpreSV--FAIDKTKCF 392
S +E V F ID T F
Sbjct: 247 FVALSTNKEKVTEFGIDSTNMF 268
>sp|Q10336|MCP6_SCHPO Meiotic coiled-coil protein 6
Length = 327
Score = 30.0 bits (66), Expect = 8.9
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = -2
Query: 541 SFALISQTYTKQCVHSIISSKELLDYIMKHDHNRSPpreSVFAIDKTKCFRTISCCE 371
SF I QT K+ + ++K+ L + + NR+PP S F+++ + ++ +SC E
Sbjct: 265 SFQQICQTLRKRLENDSSTTKQRLSKLEEIIRNRAPPSYS-FSLNCSHTYQPVSCVE 320
>sp|O74562|SEC8_SCHPO Exocyst complex component sec8
Length = 1088
Score = 30.0 bits (66), Expect = 8.9
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -2
Query: 580 VIDIIKRMNYEKASFALISQTYTKQCVHSIISSKELLDYIMKHDHNRSPpreSVFAIDKT 401
V D ++R+ ++ + LI Q +HSI S L DY++++ R P S+ A++ T
Sbjct: 879 VFDSLQRLQFD--ALLLIRMEVRLQYIHSINQSVNLPDYVVEY---RGRPDASIMALNST 933
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,029,954
Number of Sequences: 369166
Number of extensions: 1610498
Number of successful extensions: 3309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3309
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)