Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01418
(549 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GHR6|MATK_PERAE Maturase K (Intron maturase) 30 3.0
sp|Q9GHM0|MATK_UMBCA Maturase K (Intron maturase) >gi|68052... 29 6.6
>sp|Q9GHR6|MATK_PERAE Maturase K (Intron maturase)
Length = 507
Score = 30.4 bits (67), Expect = 3.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +3
Query: 441 TNRARLELHSKSNQ----LTSTSYIYYCDQIFIFIR 536
T++ + L SK NQ S S++Y C+ IFIF+R
Sbjct: 194 TSKNSISLFSKENQRFFLFLSNSHVYECEFIFIFLR 229
>sp|Q9GHM0|MATK_UMBCA Maturase K (Intron maturase)
sp|Q9GHV0|MATK_LINBE Maturase K (Intron maturase)
Length = 507
Score = 29.3 bits (64), Expect = 6.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +3
Query: 441 TNRARLELHSKSNQ----LTSTSYIYYCDQIFIFIR 536
T + + L SK NQ S S++Y C+ IFIF+R
Sbjct: 194 TPKNSISLFSKENQRFFLFLSNSHVYECEFIFIFLR 229
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,456,047
Number of Sequences: 369166
Number of extensions: 896845
Number of successful extensions: 1970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)