Planaria EST Database


DrC_01416

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01416
         (893 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92543|SNX19_HUMAN  Sorting nexin-19                            55   3e-07
sp|Q6PCN7|SMRA3_MOUSE  SWI/SNF-related matrix-associated act...    32   2.4  
sp|Q95216|SMRA3_RABIT  SWI/SNF-related matrix-associated act...    31   4.1  
sp|Q15036|SNX17_HUMAN  Sorting nexin-17                            30   9.1  
sp|Q14527|SMRA3_HUMAN  SWI/SNF-related matrix-associated act...    30   9.1  
sp|Q92325|LAG2_YEAST  Longevity-assurance protein 2                30   9.1  
>sp|Q92543|SNX19_HUMAN Sorting nexin-19
          Length = 992

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
 Frame = +2

Query: 2   SNSLSSFKNKDLSDSPQIDLLHSISNLNITNTV--RNTDVKSGHQYTAYIIKFTSIM--- 166
           S++  SF+     D P I     I NL IT T+  R       H YT Y +K+ + +   
Sbjct: 512 SSATFSFEPLSSPDGPVI-----IQNLRITGTITAREHSGTGFHPYTLYTVKYETALDGE 566

Query: 167 -TTPLHQLXXXXXXXXXXYREFVNLHHTLSDLSDY----KGIKGPSAL--DQLLLHNSPA 325
            ++ L QL          YREF+NL   L +  D     K +KGP  L  D    +    
Sbjct: 567 NSSGLQQLAYHTVNRR--YREFLNLQTRLEEKPDLRKFIKNVKGPKKLFPDLPFGNMDSD 624

Query: 326 RINVRKEFLENYLKTIVSKSGLLNNENVHRFLGVCQSA----AERPF 454
           R+  RK  LE++LK + +   + N+E V  FL +   A     ++PF
Sbjct: 625 RVEARKSLLESFLKQLCAIPEIANSEEVQEFLALNTDARIAFVKKPF 671
>sp|Q6PCN7|SMRA3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 3 (Sucrose nonfermenting
           protein 2-like 3) (TNF-response element binding protein)
           (P113)
          Length = 1003

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 359 YLKTIVSKSGLLNNENVHRFLGVCQSAAERPFEPTSTPLNAKIKRKWNLL 508
           +L+ I+ +   + N N  +   V +  AER +  T TP+   +K  W+LL
Sbjct: 545 WLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLL 594
>sp|Q95216|SMRA3_RABIT SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 3 (Sucrose nonfermenting
           protein 2-like 3) (RUSH-1)
          Length = 1005

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 359 YLKTIVSKSGLLNNENVHRFLGVCQSAAERPFEPTSTPLNAKIKRKWNLL 508
           +L+ I+ +   + N N  +   V    AER +  T TP+   +K  W+LL
Sbjct: 548 WLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLL 597
>sp|Q15036|SNX17_HUMAN Sorting nexin-17
          Length = 470

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 1/131 (0%)
 Frame = +2

Query: 77  NLNITNTVRNTDVKSGHQYTAYIIKFTSIMTTPLHQLXXXXXXXXXXYREFVNLHHTLSD 256
           + +I  T   +    G  Y AY I    ++   +             Y + + LH  L  
Sbjct: 2   HFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVR------------YSQLLGLHEQLR- 48

Query: 257 LSDYKGIKGPSALDQLLLHNSPARINVRKEFLENYLKTIVSKSGLLNNENVHRFLGVCQS 436
             +Y     P+   + L   +PA +  R+E LE Y++ +     L ++E  + FL   Q 
Sbjct: 49  -KEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQ 107

Query: 437 AAER-PFEPTS 466
             ++ P E  S
Sbjct: 108 ETQQVPTEEVS 118
>sp|Q14527|SMRA3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 3 (Sucrose nonfermenting
           protein 2-like 3) (DNA binding protein/plasminogen
           activator inhibitor-1 regulator) (Helicase-like
           transcription factor) (HIP116)
          Length = 1009

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 359 YLKTIVSKSGLLNNENVHRFLGVCQSAAERPFEPTSTPLNAKIKRKWNLL 508
           +L+ I+ +   + N N  +   V    +ER +  T TP+   +K  W+LL
Sbjct: 551 WLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
>sp|Q92325|LAG2_YEAST Longevity-assurance protein 2
          Length = 680

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +1

Query: 529 ISRFCQEGHSDR--DDITSDKDEKNVNAESNDPQ----DEVNKILSSLSKLSCHQNPAFP 690
           +     EG+ +   D  T D+D  ++N E ND       E NKIL   S+L   Q   F 
Sbjct: 455 LDELVSEGYDENMYDGDTDDEDADDINVEKNDEATKDITETNKILLIFSELHYPQEERFS 514

Query: 691 TRIPEFE 711
             + E +
Sbjct: 515 ELLVELQ 521
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,393,995
Number of Sequences: 369166
Number of extensions: 2036974
Number of successful extensions: 5371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5365
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)