Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_K13
(893 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q92543|SNX19_HUMAN Sorting nexin-19 55 3e-07
sp|Q6PCN7|SMRA3_MOUSE SWI/SNF-related matrix-associated act... 32 2.4
sp|Q95216|SMRA3_RABIT SWI/SNF-related matrix-associated act... 31 4.1
sp|Q15036|SNX17_HUMAN Sorting nexin-17 30 9.1
sp|Q14527|SMRA3_HUMAN SWI/SNF-related matrix-associated act... 30 9.1
sp|Q92325|LAG2_YEAST Longevity-assurance protein 2 30 9.1
>sp|Q92543|SNX19_HUMAN Sorting nexin-19
Length = 992
Score = 54.7 bits (130), Expect = 3e-07
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Frame = +2
Query: 2 SNSLSSFKNKDLSDSPQIDLLHSISNLNITNTV--RNTDVKSGHQYTAYIIKFTSIM--- 166
S++ SF+ D P I I NL IT T+ R H YT Y +K+ + +
Sbjct: 512 SSATFSFEPLSSPDGPVI-----IQNLRITGTITAREHSGTGFHPYTLYTVKYETALDGE 566
Query: 167 -TTPLHQLXXXXXXXXXXYREFVNLHHTLSDLSDY----KGIKGPSAL--DQLLLHNSPA 325
++ L QL YREF+NL L + D K +KGP L D +
Sbjct: 567 NSSGLQQLAYHTVNRR--YREFLNLQTRLEEKPDLRKFIKNVKGPKKLFPDLPFGNMDSD 624
Query: 326 RINVRKEFLENYLKTIVSKSGLLNNENVHRFLGVCQSA----AERPF 454
R+ RK LE++LK + + + N+E V FL + A ++PF
Sbjct: 625 RVEARKSLLESFLKQLCAIPEIANSEEVQEFLALNTDARIAFVKKPF 671
>sp|Q6PCN7|SMRA3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 3 (Sucrose nonfermenting
protein 2-like 3) (TNF-response element binding protein)
(P113)
Length = 1003
Score = 32.0 bits (71), Expect = 2.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 359 YLKTIVSKSGLLNNENVHRFLGVCQSAAERPFEPTSTPLNAKIKRKWNLL 508
+L+ I+ + + N N + V + AER + T TP+ +K W+LL
Sbjct: 545 WLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLL 594
>sp|Q95216|SMRA3_RABIT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 3 (Sucrose nonfermenting
protein 2-like 3) (RUSH-1)
Length = 1005
Score = 31.2 bits (69), Expect = 4.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 359 YLKTIVSKSGLLNNENVHRFLGVCQSAAERPFEPTSTPLNAKIKRKWNLL 508
+L+ I+ + + N N + V AER + T TP+ +K W+LL
Sbjct: 548 WLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLL 597
>sp|Q15036|SNX17_HUMAN Sorting nexin-17
Length = 470
Score = 30.0 bits (66), Expect = 9.1
Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 1/131 (0%)
Frame = +2
Query: 77 NLNITNTVRNTDVKSGHQYTAYIIKFTSIMTTPLHQLXXXXXXXXXXYREFVNLHHTLSD 256
+ +I T + G Y AY I ++ + Y + + LH L
Sbjct: 2 HFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVR------------YSQLLGLHEQLR- 48
Query: 257 LSDYKGIKGPSALDQLLLHNSPARINVRKEFLENYLKTIVSKSGLLNNENVHRFLGVCQS 436
+Y P+ + L +PA + R+E LE Y++ + L ++E + FL Q
Sbjct: 49 -KEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQ 107
Query: 437 AAER-PFEPTS 466
++ P E S
Sbjct: 108 ETQQVPTEEVS 118
>sp|Q14527|SMRA3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 3 (Sucrose nonfermenting
protein 2-like 3) (DNA binding protein/plasminogen
activator inhibitor-1 regulator) (Helicase-like
transcription factor) (HIP116)
Length = 1009
Score = 30.0 bits (66), Expect = 9.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 359 YLKTIVSKSGLLNNENVHRFLGVCQSAAERPFEPTSTPLNAKIKRKWNLL 508
+L+ I+ + + N N + V +ER + T TP+ +K W+LL
Sbjct: 551 WLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
>sp|Q92325|LAG2_YEAST Longevity-assurance protein 2
Length = 680
Score = 30.0 bits (66), Expect = 9.1
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +1
Query: 529 ISRFCQEGHSDR--DDITSDKDEKNVNAESNDPQ----DEVNKILSSLSKLSCHQNPAFP 690
+ EG+ + D T D+D ++N E ND E NKIL S+L Q F
Sbjct: 455 LDELVSEGYDENMYDGDTDDEDADDINVEKNDEATKDITETNKILLIFSELHYPQEERFS 514
Query: 691 TRIPEFE 711
+ E +
Sbjct: 515 ELLVELQ 521
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,393,995
Number of Sequences: 369166
Number of extensions: 2036974
Number of successful extensions: 5371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5365
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)