Planaria EST Database


DrC_01415

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01415
         (653 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P82804|WIBG_DROME  Within the bgcn gene intron protein          89   1e-17
sp|Q59037|SMC_METJA  Chromosome partition protein smc homolog      39   0.009
sp|O75665|OFD1_HUMAN  Oral-facial-digital syndrome 1 protein...    34   0.38 
sp|Q9USW8|YHY1_SCHPO  Hypothetical protein C19C7.01 in chrom...    34   0.38 
sp|P51955|NEK2_HUMAN  Serine/threonine-protein kinase Nek2 (...    33   0.50 
sp|Q9UKX3|MYH13_HUMAN  Myosin-13 (Myosin heavy chain, skelet...    33   0.65 
sp|Q95XZ5|NPBL_CAEEL  Nipped-B-like protein pqn-85 (Prion-li...    32   1.1  
sp|Q02724|ULP1_YEAST  Ubiquitin-like-specific protease 1           32   1.1  
sp|Q90688|MYPC3_CHICK  Myosin-binding protein C, cardiac-typ...    32   1.1  
sp|P34243|YKB7_YEAST  Hypothetical 78.3 kDa protein in RAM2-...    32   1.4  
>sp|P82804|WIBG_DROME Within the bgcn gene intron protein
          Length = 207

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 21/192 (10%)
 Frame = +2

Query: 56  YLPATQRPDGTWRKPQKVKEGYIPQEEVPLYRSRG---VANRIEESTLRGYLTPLETIAT 226
           ++PAT+RPDGTWRK ++VK+GY+PQEEVPLY S+G   VA R +     G    L   + 
Sbjct: 12  FIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQR-QAGVPPGMCPLLAAESK 70

Query: 227 SERNNSKHT--------------GPAGGIIVLEE---PNMXXXXXXXXXINVETLIKSVE 355
            ER   + T               PA G++V+     P               +  + + 
Sbjct: 71  KEREKQERTRAKKQEKESGRQPKAPAPGVLVMPPSTCPPPKVSQQQQQQQQQPSGSRDIN 130

Query: 356 KVSIKENPVVENDSNLELTN-EKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSK 532
            +S      ++ D+  E+ +  K+L+ L+K+ R+I +++ RI A     LD+DQ  K+ K
Sbjct: 131 SISKTLEDTLKLDAAQEVVDPAKQLKKLRKKIREIEQIESRIQAGEQKKLDKDQLDKVKK 190

Query: 533 EIEIENEIKQLE 568
           + EI  +IK LE
Sbjct: 191 KSEILRQIKDLE 202
>sp|Q59037|SMC_METJA Chromosome partition protein smc homolog
          Length = 1169

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 3/180 (1%)
 Frame = +2

Query: 44   DGSLYLPATQRPDGTWRKPQKVKEGYIPQEEVPLYRSRGVANRIE--ESTLRGYLTPLET 217
            DG +  P+     GT++   K+K       +V L +   +A+ I   ES LR     +E 
Sbjct: 648  DGDVIEPSGAMIGGTFKSKAKIKV------DVDLSKLNKIADEIIAIESELRKIKEEIER 701

Query: 218  IATS-ERNNSKHTGPAGGIIVLEEPNMXXXXXXXXXINVETLIKSVEKVSIKENPVVEND 394
            ++   +R+++K       + ++++  M         I  +  IK ++++ +K   ++E  
Sbjct: 702  LSKIVKRSSAKKMEIENTLEIIKKNEMRKRE-----IAEKNTIK-IKELELKNKDILEEL 755

Query: 395  SNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSKEIEIENEIKQLEKE 574
              L L  E+ L  + +   +I EL +R +   N + + +    L +  EIE E+K LEKE
Sbjct: 756  EELNLKREEILNRINEIESKINELIERREKIINELKEYESDENLKRMNEIEGELKILEKE 815
>sp|O75665|OFD1_HUMAN Oral-facial-digital syndrome 1 protein (Protein 71-7A)
          Length = 1012

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = +2

Query: 353  EKVSIKENPVVEN-------DSNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDED 511
            E+  I+E  V E         SNL+   E+  R L+K +++              +++E 
Sbjct: 878  EEEKIREQQVKERRQREERRQSNLQEVLERERRELEKLYQE------------RKMIEES 925

Query: 512  QKIKLSKEIEIENEIKQLEKE 574
             KIK+ KE+E+ENE++   +E
Sbjct: 926  LKIKIKKELEMENELEMSNQE 946
>sp|Q9USW8|YHY1_SCHPO Hypothetical protein C19C7.01 in chromosome II
          Length = 196

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 44  DGSLYLPATQRPDGTWRKPQKVKEGYIPQEEVPLYR 151
           DG   +P ++R DG+ R+ + VK GY   E++  YR
Sbjct: 14  DGKWIIPESRRKDGSVRRERAVKPGYTAPEDIKRYR 49
>sp|P51955|NEK2_HUMAN Serine/threonine-protein kinase Nek2 (NimA-related protein kinase
           2) (NimA-like protein kinase 1) (HSPK 21)
          Length = 445

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 25/76 (32%), Positives = 46/76 (60%)
 Frame = +2

Query: 341 IKSVEKVSIKENPVVENDSNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKI 520
           +K   + S++E  ++EN    +L  +++ RNL++R RQ+ E +K  D+ P  VL E   +
Sbjct: 254 LKDYHRPSVEE--ILENPLIADLVADEQRRNLERRGRQLGEPEKSQDSSP--VLSE---L 306

Query: 521 KLSKEIEIENEIKQLE 568
           KL KEI+++   + L+
Sbjct: 307 KL-KEIQLQERERALK 321
>sp|Q9UKX3|MYH13_HUMAN Myosin-13 (Myosin heavy chain, skeletal muscle, extraocular)
            (MyHC-eo)
          Length = 1938

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +2

Query: 383  VENDSNLELTNEKRL--RNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSKEIEIENEI 556
            +  +S ++L NEK+     LKK+  ++ +L+ RID +  + L   +KIK     E++  I
Sbjct: 1065 MSQESIMDLENEKQQIEEKLKKKEFELSQLQARIDDEQVHSLQFQKKIK-----ELQARI 1119

Query: 557  KQLEKE 574
            ++LE+E
Sbjct: 1120 EELEEE 1125
>sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 (Prion-like-(Q/n-rich)-domain-bearing
           protein 85) (SCC2 homolog)
          Length = 2203

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 22/79 (27%), Positives = 45/79 (56%)
 Frame = +2

Query: 335 TLIKSVEKVSIKENPVVENDSNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQ 514
           ++I S +K+  ++   +E +   E    KR + L+++ ++  ELK+   A+   +L+E Q
Sbjct: 179 SVISSHQKLYEEQCRQIEKERK-EQEERKRKQELEEQRKRNEELKRLRIAEEKRLLEEQQ 237

Query: 515 KIKLSKEIEIENEIKQLEK 571
           +++   E E   EIK+LE+
Sbjct: 238 RLREQMERERLAEIKRLEE 256
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1
          Length = 621

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/63 (26%), Positives = 37/63 (58%)
 Frame = +2

Query: 386 ENDSNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSKEIEIENEIKQL 565
           END +L    EK++ +L+++H+  +  K + D     +L+ ++  K  +  EI NE K++
Sbjct: 333 ENDDDLVFVKEKKISSLERKHKDYLNQKLKFDRS---ILEFEKDFK--RYNEILNERKKI 387

Query: 566 EKE 574
           +++
Sbjct: 388 QED 390
>sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-type (Cardiac MyBP-C) (C-protein,
           cardiac muscle isoform)
          Length = 1272

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +2

Query: 419 KRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSKEI 538
           KRL+ +KK  ++     K++D  P Y +D+ QKIKL  E+
Sbjct: 349 KRLKRIKKEEKKSTAFLKKLD--PAYQVDKGQKIKLMVEV 386
>sp|P34243|YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-ATP7 intergenic region
          Length = 683

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = +2

Query: 347 SVEKVSIKENPVVENDSNLELTNEKRLRNLKKRHRQIIELKKR-----IDADPNYVLDED 511
           SV+ +  +  P+V N+  L + +  RL +  KRH   I  KK      I  + + ++ E+
Sbjct: 264 SVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLDILSKKNTIVKDISQEIDKLIQEN 323

Query: 512 QKIKLSKE-IEIENEIKQLEKE 574
           +K+K  K+  E  NEIK L K+
Sbjct: 324 KKLKNYKQRKENWNEIKLLRKD 345
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,226,728
Number of Sequences: 369166
Number of extensions: 965054
Number of successful extensions: 3770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3759
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)