Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_K07
(653 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P82804|WIBG_DROME Within the bgcn gene intron protein 89 1e-17
sp|Q59037|SMC_METJA Chromosome partition protein smc homolog 39 0.009
sp|O75665|OFD1_HUMAN Oral-facial-digital syndrome 1 protein... 34 0.38
sp|Q9USW8|YHY1_SCHPO Hypothetical protein C19C7.01 in chrom... 34 0.38
sp|P51955|NEK2_HUMAN Serine/threonine-protein kinase Nek2 (... 33 0.50
sp|Q9UKX3|MYH13_HUMAN Myosin-13 (Myosin heavy chain, skelet... 33 0.65
sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 (Prion-li... 32 1.1
sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 32 1.1
sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-typ... 32 1.1
sp|P34243|YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-... 32 1.4
>sp|P82804|WIBG_DROME Within the bgcn gene intron protein
Length = 207
Score = 89.0 bits (219), Expect = 1e-17
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 21/192 (10%)
Frame = +2
Query: 56 YLPATQRPDGTWRKPQKVKEGYIPQEEVPLYRSRG---VANRIEESTLRGYLTPLETIAT 226
++PAT+RPDGTWRK ++VK+GY+PQEEVPLY S+G VA R + G L +
Sbjct: 12 FIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQR-QAGVPPGMCPLLAAESK 70
Query: 227 SERNNSKHT--------------GPAGGIIVLEE---PNMXXXXXXXXXINVETLIKSVE 355
ER + T PA G++V+ P + + +
Sbjct: 71 KEREKQERTRAKKQEKESGRQPKAPAPGVLVMPPSTCPPPKVSQQQQQQQQQPSGSRDIN 130
Query: 356 KVSIKENPVVENDSNLELTN-EKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSK 532
+S ++ D+ E+ + K+L+ L+K+ R+I +++ RI A LD+DQ K+ K
Sbjct: 131 SISKTLEDTLKLDAAQEVVDPAKQLKKLRKKIREIEQIESRIQAGEQKKLDKDQLDKVKK 190
Query: 533 EIEIENEIKQLE 568
+ EI +IK LE
Sbjct: 191 KSEILRQIKDLE 202
>sp|Q59037|SMC_METJA Chromosome partition protein smc homolog
Length = 1169
Score = 39.3 bits (90), Expect = 0.009
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 3/180 (1%)
Frame = +2
Query: 44 DGSLYLPATQRPDGTWRKPQKVKEGYIPQEEVPLYRSRGVANRIE--ESTLRGYLTPLET 217
DG + P+ GT++ K+K +V L + +A+ I ES LR +E
Sbjct: 648 DGDVIEPSGAMIGGTFKSKAKIKV------DVDLSKLNKIADEIIAIESELRKIKEEIER 701
Query: 218 IATS-ERNNSKHTGPAGGIIVLEEPNMXXXXXXXXXINVETLIKSVEKVSIKENPVVEND 394
++ +R+++K + ++++ M I + IK ++++ +K ++E
Sbjct: 702 LSKIVKRSSAKKMEIENTLEIIKKNEMRKRE-----IAEKNTIK-IKELELKNKDILEEL 755
Query: 395 SNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSKEIEIENEIKQLEKE 574
L L E+ L + + +I EL +R + N + + + L + EIE E+K LEKE
Sbjct: 756 EELNLKREEILNRINEIESKINELIERREKIINELKEYESDENLKRMNEIEGELKILEKE 815
>sp|O75665|OFD1_HUMAN Oral-facial-digital syndrome 1 protein (Protein 71-7A)
Length = 1012
Score = 33.9 bits (76), Expect = 0.38
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = +2
Query: 353 EKVSIKENPVVEN-------DSNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDED 511
E+ I+E V E SNL+ E+ R L+K +++ +++E
Sbjct: 878 EEEKIREQQVKERRQREERRQSNLQEVLERERRELEKLYQE------------RKMIEES 925
Query: 512 QKIKLSKEIEIENEIKQLEKE 574
KIK+ KE+E+ENE++ +E
Sbjct: 926 LKIKIKKELEMENELEMSNQE 946
>sp|Q9USW8|YHY1_SCHPO Hypothetical protein C19C7.01 in chromosome II
Length = 196
Score = 33.9 bits (76), Expect = 0.38
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 44 DGSLYLPATQRPDGTWRKPQKVKEGYIPQEEVPLYR 151
DG +P ++R DG+ R+ + VK GY E++ YR
Sbjct: 14 DGKWIIPESRRKDGSVRRERAVKPGYTAPEDIKRYR 49
>sp|P51955|NEK2_HUMAN Serine/threonine-protein kinase Nek2 (NimA-related protein kinase
2) (NimA-like protein kinase 1) (HSPK 21)
Length = 445
Score = 33.5 bits (75), Expect = 0.50
Identities = 25/76 (32%), Positives = 46/76 (60%)
Frame = +2
Query: 341 IKSVEKVSIKENPVVENDSNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKI 520
+K + S++E ++EN +L +++ RNL++R RQ+ E +K D+ P VL E +
Sbjct: 254 LKDYHRPSVEE--ILENPLIADLVADEQRRNLERRGRQLGEPEKSQDSSP--VLSE---L 306
Query: 521 KLSKEIEIENEIKQLE 568
KL KEI+++ + L+
Sbjct: 307 KL-KEIQLQERERALK 321
>sp|Q9UKX3|MYH13_HUMAN Myosin-13 (Myosin heavy chain, skeletal muscle, extraocular)
(MyHC-eo)
Length = 1938
Score = 33.1 bits (74), Expect = 0.65
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +2
Query: 383 VENDSNLELTNEKRL--RNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSKEIEIENEI 556
+ +S ++L NEK+ LKK+ ++ +L+ RID + + L +KIK E++ I
Sbjct: 1065 MSQESIMDLENEKQQIEEKLKKKEFELSQLQARIDDEQVHSLQFQKKIK-----ELQARI 1119
Query: 557 KQLEKE 574
++LE+E
Sbjct: 1120 EELEEE 1125
>sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 (Prion-like-(Q/n-rich)-domain-bearing
protein 85) (SCC2 homolog)
Length = 2203
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/79 (27%), Positives = 45/79 (56%)
Frame = +2
Query: 335 TLIKSVEKVSIKENPVVENDSNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQ 514
++I S +K+ ++ +E + E KR + L+++ ++ ELK+ A+ +L+E Q
Sbjct: 179 SVISSHQKLYEEQCRQIEKERK-EQEERKRKQELEEQRKRNEELKRLRIAEEKRLLEEQQ 237
Query: 515 KIKLSKEIEIENEIKQLEK 571
+++ E E EIK+LE+
Sbjct: 238 RLREQMERERLAEIKRLEE 256
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1
Length = 621
Score = 32.3 bits (72), Expect = 1.1
Identities = 17/63 (26%), Positives = 37/63 (58%)
Frame = +2
Query: 386 ENDSNLELTNEKRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSKEIEIENEIKQL 565
END +L EK++ +L+++H+ + K + D +L+ ++ K + EI NE K++
Sbjct: 333 ENDDDLVFVKEKKISSLERKHKDYLNQKLKFDRS---ILEFEKDFK--RYNEILNERKKI 387
Query: 566 EKE 574
+++
Sbjct: 388 QED 390
>sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-type (Cardiac MyBP-C) (C-protein,
cardiac muscle isoform)
Length = 1272
Score = 32.3 bits (72), Expect = 1.1
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 419 KRLRNLKKRHRQIIELKKRIDADPNYVLDEDQKIKLSKEI 538
KRL+ +KK ++ K++D P Y +D+ QKIKL E+
Sbjct: 349 KRLKRIKKEEKKSTAFLKKLD--PAYQVDKGQKIKLMVEV 386
>sp|P34243|YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-ATP7 intergenic region
Length = 683
Score = 32.0 bits (71), Expect = 1.4
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +2
Query: 347 SVEKVSIKENPVVENDSNLELTNEKRLRNLKKRHRQIIELKKR-----IDADPNYVLDED 511
SV+ + + P+V N+ L + + RL + KRH I KK I + + ++ E+
Sbjct: 264 SVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLDILSKKNTIVKDISQEIDKLIQEN 323
Query: 512 QKIKLSKE-IEIENEIKQLEKE 574
+K+K K+ E NEIK L K+
Sbjct: 324 KKLKNYKQRKENWNEIKLLRKD 345
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,226,728
Number of Sequences: 369166
Number of extensions: 965054
Number of successful extensions: 3770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3759
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)