Planaria EST Database


DrC_01411

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01411
         (545 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90944|PGLB_CHICK  Dermatan sulfate proteoglycan 3 precur...    34   0.27 
sp|Q00155|VG34_ICHV1  Hypothetical gene 34 protein                 31   1.7  
sp|P97464|EXT1_MOUSE  Exostosin-1 (Glucuronosyl-N-acetylgluc...    31   2.2  
sp|Q16394|EXT1_HUMAN  Exostosin-1 (Glucuronosyl-N-acetylgluc...    31   2.2  
sp|Q8K4Q0|RPTOR_MOUSE  Regulatory associated protein of mTOR...    30   3.8  
sp|Q58365|HIS8_METJA  Histidinol-phosphate aminotransferase ...    30   5.0  
sp|P28976|RRPL_TSWV1  RNA-directed RNA polymerase (L protein)      29   6.5  
sp|P70186|PGLB_MOUSE  Dermatan sulfate proteoglycan 3 precur...    29   6.5  
sp|P30619|SEC1_YEAST  Protein transport protein SEC1               29   6.5  
sp|Q02224|CENPE_HUMAN  Centromeric protein E (CENP-E protein)      29   8.5  
>sp|Q90944|PGLB_CHICK Dermatan sulfate proteoglycan 3 precursor (Epiphycan) (Small
           chondroitin/dermatan sulfate proteoglycan)
           (Proteoglycan-Lb) (PG-Lb)
          Length = 316

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 49  IFSSSLKHIKIPTPEEFIKLFCQIPTTQPVFNDTFNKIEHHSQLFR-VHDIRVTADPL 219
           I  ++L H+ +P PE    L  Q    Q +  DTF K+   S + R + DIR+  +P+
Sbjct: 238 ITDNNLDHVPLPLPESLQALHLQNNNIQEMHEDTFCKMRDFSYVRRALEDIRLDGNPI 295
>sp|Q00155|VG34_ICHV1 Hypothetical gene 34 protein
          Length = 441

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
 Frame = +1

Query: 61  SLKHIKIPTPEEF--IKLFCQIPTTQPVF-NDTFN--KIEHHSQLFRVHDIRVTADPLYN 225
           S+K     TP  F  I L   I TT  +F + T N  K+ H +    ++D+  T  P+Y+
Sbjct: 192 SMKQKNFLTPFFFSSINLAGPIETTNQLFISMTINTQKLTHET----IYDLGKTLYPIYS 247

Query: 226 SLENDSKFLLSDSIEVPFVKCDHYIQRIPKIGSIY 330
            LE D+KF    ++   F++C  +I    KIG I+
Sbjct: 248 LLEVDTKFNWFCNMIALFLEC--FINTPNKIGMIW 280
>sp|P97464|EXT1_MOUSE Exostosin-1 (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
           acetylglucosaminyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase) (Multiple
           exostoses protein 1 homolog)
          Length = 746

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 289 DHYIQRIPKIGSIYSDCLQFDSFQSNLIKIPK-KRKAITEVCIGKKCKLENCF 444
           DH+  R P     +    Q ++  S++   P+ KR A + +  GKKC++E+CF
Sbjct: 52  DHFWPRFPDALRPFFPWDQLENEDSSVHISPRQKRDANSSIYKGKKCRMESCF 104
>sp|Q16394|EXT1_HUMAN Exostosin-1 (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
           acetylglucosaminyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
           suppressor protein EXT1) (Multiple exostoses protein 1)
          Length = 746

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 289 DHYIQRIPKIGSIYSDCLQFDSFQSNLIKIPK-KRKAITEVCIGKKCKLENCF 444
           DH+  R P     +    Q ++  S++   P+ KR A + +  GKKC++E+CF
Sbjct: 52  DHFWPRFPDALRPFVPWDQLENEDSSVHISPRQKRDANSSIYKGKKCRMESCF 104
>sp|Q8K4Q0|RPTOR_MOUSE Regulatory associated protein of mTOR (Raptor) (P150 target of
            rapamycin (TOR)-scaffold protein)
          Length = 1335

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +1

Query: 295  YIQRIPK----IGSIYSDCLQFDSFQSNLIKIPKKRKAITEVCIGKKCKLENCFYSLFFT 462
            Y+Q+ P+      S+  D   FD      + + +  K +T + I  +  L  C     FT
Sbjct: 1218 YLQKHPEGHIVSVSVNGDVRFFDPRMPESVNVMQIVKGLTALDIHPQANLIACGSMNQFT 1277

Query: 463  NLYNTNKELLINIK 504
             +YN N EL+ NIK
Sbjct: 1278 AIYNGNGELINNIK 1291
>sp|Q58365|HIS8_METJA Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
           transaminase)
          Length = 373

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +1

Query: 187 VHDIRVTADPLYNSLEN--DSKFLLSDS----IEVPFVKCDHYIQRIPKIGSIYSDCLQF 348
           V D   + + LYN L+   D K   S++    +E+  +K   + + + K G I  DC  F
Sbjct: 284 VRDGIKSREMLYNGLKKFKDIKVYPSEANYLLVELKTMKAKEFCEELLKRGVIVRDCTSF 343

Query: 349 DSFQSNLIKI 378
           D    N +++
Sbjct: 344 DGLGDNYVRV 353
>sp|P28976|RRPL_TSWV1 RNA-directed RNA polymerase (L protein)
          Length = 2875

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 24/130 (18%), Positives = 51/130 (39%)
 Frame = +1

Query: 142  NDTFNKIEHHSQLFRVHDIRVTADPLYNSLENDSKFLLSDSIEVPFVKCDHYIQRIPKIG 321
            N    K+   S+  R+ ++++     Y ++ +D   ++     +        + R+P++G
Sbjct: 2321 NKMIVKVNATSRQIRLENVKLVVKIKYENVNSDVWDIIESQKSL--------VLRLPEVG 2372

Query: 322  SIYSDCLQFDSFQSNLIKIPKKRKAITEVCIGKKCKLENCFYSLFFTNLYNTNKELLINI 501
              +SD  +    ++  IK  K R   +   I     L      +   ++  T  E L+NI
Sbjct: 2373 EFFSDMYKTADSETETIKTIKNRLMTSLTFIEAFGNLSQQIKEIVDDDIRETMDEFLMNI 2432

Query: 502  KCEFSEDFNN 531
            +    E   N
Sbjct: 2433 RDTCLEGLEN 2442
>sp|P70186|PGLB_MOUSE Dermatan sulfate proteoglycan 3 precursor (Epiphycan) (Small
           chondroitin/dermatan sulfate proteoglycan)
           (Proteoglycan-Lb) (PG-Lb)
          Length = 322

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 49  IFSSSLKHIKIPTPEEFIKLFCQIPTTQPVFNDTFNKIEHHSQLFR-VHDIRVTADPL 219
           I  +SL HI +P PE    L  Q      +  DTF  +++ + + + + DIR+  +P+
Sbjct: 244 ITDNSLDHIPLPLPESLRALHLQNNDILEMHEDTFCNVKNLTYVRKALEDIRLDGNPI 301
>sp|P30619|SEC1_YEAST Protein transport protein SEC1
          Length = 724

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
 Frame = +2

Query: 86  LQKNLSNYFVKFQQRNQFSMI------LSIKSSTTVNYLEYMIYESLLIHCIIL*KTIRN 247
           +++NLS + + F       +I      L++K  T ++ L Y+I  +L    II    I+ 
Sbjct: 393 IEQNLSGFGMDFSGEKIKHIIDDLLPALAMKEPTILDKLRYIIAYALFRGGIIELDFIK- 451

Query: 248 FC*VIVSKCHLLNAIIIFNEYRKSVQFIPIV--YNLIVFNLI**KSRKKEKLLQK 406
                     LLN I + +E+    Q++ I   Y+LI F LI  K + K+K  QK
Sbjct: 452 ----------LLNFIGVTHEHENFQQYLKIFRNYDLIDFKLI--KDKPKDKPFQK 494
>sp|Q02224|CENPE_HUMAN Centromeric protein E (CENP-E protein)
          Length = 2663

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 373 KIPKKRKAITEVCIGKKCKLENCFYSLFF---TNLYNTNKELLINIKCEFSEDFNNKSEI 543
           ++  KRK     C+GK  K++N  Y+  F   TN+     +L IN+  E  E   ++S++
Sbjct: 412 ELKAKRKRRVTWCLGKINKMKNSNYADQFNIPTNITTKTHKLSINLLREIDESVCSESDV 471
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,326,533
Number of Sequences: 369166
Number of extensions: 1071520
Number of successful extensions: 2894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2894
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)