Planaria EST Database


DrC_01409

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01409
         (769 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52737|ZN136_HUMAN  Zinc finger protein 136                     36   0.13 
sp|P18715|ZG26_XENLA  Gastrula zinc finger protein XLCGF26.1       35   0.17 
sp|P18746|ZO26_XENLA  Oocyte zinc finger protein XLCOF26           34   0.38 
sp|Q9RV97|ILVD_DEIRA  Dihydroxy-acid dehydratase (DAD)             33   0.85 
sp|P18731|ZG62_XENLA  Gastrula zinc finger protein XLCGF62.1       32   1.5  
sp|O75820|ZN189_HUMAN  Zinc finger protein 189                     32   1.9  
sp|P58317|ZN121_HUMAN  Zinc finger protein 121 (Zinc finger ...    32   2.5  
sp|Q8C827|ZFP62_MOUSE  Zinc finger protein 62 homolog (Zfp-6...    32   2.5  
sp|Q98BZ8|ILVD1_RHILO  Dihydroxy-acid dehydratase 1 (DAD 1)        32   2.5  
sp|Q02975|TCF17_RAT  Zinc finger protein 354A (Transcription...    31   3.2  
>sp|P52737|ZN136_HUMAN Zinc finger protein 136
          Length = 540

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 13/150 (8%)
 Frame = +3

Query: 6   KCNRSFNF-ESLKVHEKVCRGQ--FLAKSPSKP--SAITFGRSLDIYDESINADSESDPQ 170
           +C ++F++  SL++HE++  G+  F+ K   K   SA TF                   Q
Sbjct: 312 QCGKAFSYLPSLRLHERIHTGEKPFVCKQCGKAFRSASTF-------------------Q 352

Query: 171 SGFKVNQESKFVTCKSCGKTFT-IHSINHHTVACDLRAXXXXXXXXXXXXHDAGP----- 332
              + +   K   CK CG+ F+ I S+  H +                  H   P     
Sbjct: 353 IHERTHTGEKPYECKECGEAFSCIPSMRRHMIK-HTGEGPYKCKVCGKPFHSLSPFRIHE 411

Query: 333 -THIGRLPGVVCYICGRNF-GTTSIDIHEK 416
            TH G  P  VC  CG+ F  +TSI IHE+
Sbjct: 412 RTHTGEKP-YVCKHCGKAFVSSTSIRIHER 440
>sp|P18715|ZG26_XENLA Gastrula zinc finger protein XLCGF26.1
          Length = 337

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
 Frame = +3

Query: 3   TKCNRSFNFE-SLKVHEKVCRGQFLAKSPSKPSAITF-GRSLDIYDESINADSESDPQSG 176
           T+C +SF+ + +L+ H K+  G+       KP   T+ G+S   + + I+       Q+ 
Sbjct: 233 TECGKSFSEKKTLREHNKIHTGE-------KPFTCTYCGKS---FSQRISL------QNH 276

Query: 177 FKVNQESKFVTCKSCGKTFTIHSINHHTVACDLRAXXXXXXXXXXXXHDAGPTHIGRLPG 356
           FK++   K  +C  CGK FTI S    T+   L+                  TH G  P 
Sbjct: 277 FKIHTGEKPFSCTECGKCFTIKS----TLQSHLKR-----------------THTGEKP- 314

Query: 357 VVCYICGRNF 386
             C  CG++F
Sbjct: 315 FTCTECGKSF 324
>sp|P18746|ZO26_XENLA Oocyte zinc finger protein XLCOF26
          Length = 196

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 2/139 (1%)
 Frame = +3

Query: 3   TKCNRSFN-FESLKVHEKVCRGQFLAKSPSKPSAITFGRSLDIYDESINADSESDPQSGF 179
           T+C +SFN + +L+ H K+  G+     P      +   SL  +                
Sbjct: 93  TECGKSFNLWSTLRNHHKIHTGEKPFTCPECGKKFSVKNSLRKHQ--------------- 137

Query: 180 KVNQESKFVTCKSCGKTFTIHSINHHTVACDLRAXXXXXXXXXXXXHDAGPTHIGRLPGV 359
           + +   K  TC  CGKTFT  S  H                     H +  TH G  P  
Sbjct: 138 RTHARKKLFTCTECGKTFTKKSTFH--------------------MHQS--THTGEKP-F 174

Query: 360 VCYICGRNFGTT-SIDIHE 413
            C  CG++F    ++ IH+
Sbjct: 175 TCTECGKSFAKNGNLRIHQ 193

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = +3

Query: 3   TKCNRSFNFES-LKVHEKVCRGQFLAKSPSKPSAITFGRSLDIYDESINADSESDPQSGF 179
           T+C + F  +S L+ H+++  G  L          T  R+L I+                
Sbjct: 37  TECGKIFTRKSNLRKHQRIHTGDNLFTCTECGKRFTEKRNLLIHQ--------------- 81

Query: 180 KVNQESKFVTCKSCGKTFTIHSI--NHHTV 263
           +++   K  TC  CGK+F + S   NHH +
Sbjct: 82  RIHTGEKPFTCTECGKSFNLWSTLRNHHKI 111
>sp|Q9RV97|ILVD_DEIRA Dihydroxy-acid dehydratase (DAD)
          Length = 607

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 69  FLAKSPSKPSAITFG---RSLDIYDESINADSESDPQSGFKVNQESKFVTCKSCGKTFTI 239
           F++  P +   +  G    +LD+ D  + A  +S  +   ++ + S   TC SC   FT 
Sbjct: 142 FVSGGPMEAGKVKLGDGEHALDLVDAMVMAADDSVSEEDIELVERSACPTCGSCSGMFTA 201

Query: 240 HSINHHTVACDL 275
           +S+N  T A  L
Sbjct: 202 NSMNCLTEALGL 213
>sp|P18731|ZG62_XENLA Gastrula zinc finger protein XLCGF62.1
          Length = 169

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +3

Query: 207 TCKSCGKTFTIHSI-NHHTVACD------LRAXXXXXXXXXXXXHDAGPTHIGRLPGVVC 365
           TC  CGK F++ SI NHH  A        +              H    TH G  P  VC
Sbjct: 91  TCTDCGKCFSVKSILNHHRQAIHSGEKPFICTECGKGFASKHYLHGHKRTHTGEKP-FVC 149

Query: 366 YICGRNFGTT-SIDIHEK 416
             CG+ F +   + +H++
Sbjct: 150 TECGKGFASNYYLHVHKR 167
>sp|O75820|ZN189_HUMAN Zinc finger protein 189
          Length = 626

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 16/154 (10%)
 Frame = +3

Query: 6   KCNRSFN-FESLKVHEKVCRG------QFLAKSPSKPSAITFGRSLDIYDESI--NADSE 158
           +C +SF+   +L  H+++  G      +   K+ S+ S +   + +   +++   N   E
Sbjct: 376 ECGKSFSQLCNLTRHQRIHTGDKPHKCEECGKAFSRSSGLIQHQRIHTREKTYPYNETKE 435

Query: 159 S-DPQSGFKVNQE----SKFVTCKSCGKTFTI--HSINHHTVACDLRAXXXXXXXXXXXX 317
           S DP     + QE     K   C  CGKTF++  H + H  +                  
Sbjct: 436 SFDPNCSLVIQQEVYPKEKSYKCDECGKTFSVSAHLVQHQRI------------------ 477

Query: 318 HDAGPTHIGRLPGVVCYICGRNFGTTSIDIHEKQ 419
                 H G  P  +C +CG++F  +S  I  ++
Sbjct: 478 ------HTGEKP-YLCTVCGKSFSRSSFLIEHQR 504
>sp|P58317|ZN121_HUMAN Zinc finger protein 121 (Zinc finger protein 20)
          Length = 295

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/100 (27%), Positives = 37/100 (37%)
 Frame = +3

Query: 153 SESDPQSGFKVNQESKFVTCKSCGKTFTIHSINHHTVACDLRAXXXXXXXXXXXXHDAGP 332
           S S  ++ F+++   K   CK CGK FT+ S  H+ V                       
Sbjct: 172 SSSCLKNHFRIHTGIKPYKCKECGKAFTVSSSLHNHV----------------------K 209

Query: 333 THIGRLPGVVCYICGRNFGTTSIDIHEKQCLEKFRKQNNE 452
            H G  P   C  CG+ F T+S      Q +E  R    E
Sbjct: 210 IHTGEKP-YECKDCGKAFATSS------QLIEHIRTHTGE 242
>sp|Q8C827|ZFP62_MOUSE Zinc finger protein 62 homolog (Zfp-62) (ZT3)
          Length = 914

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 17/154 (11%)
 Frame = +3

Query: 6   KCNRSFNFESLKVHEKVCRG-------QFLAKSPSKPSAITFGRSLDIYDESINAD---S 155
           +C +SFN+ SL +  KV              K+    S +   + +   ++    D    
Sbjct: 331 ECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDICGK 390

Query: 156 ESDPQSGFKVNQE----SKFVTCKSCGKTFTIHS--INHHTVACDLRAXXXXXXXXXXXX 317
                SG  V++      K   CK CGK+F+ +S  + H T+                  
Sbjct: 391 AFSYSSGLAVHKSIHPGKKAHECKDCGKSFSYNSLLLQHKTI------------------ 432

Query: 318 HDAGPTHIGRLPGVVCYICGRNFGTTS-IDIHEK 416
                 H G  P  VC +CG+ F   S + +H +
Sbjct: 433 ------HTGERP-YVCDVCGKTFRNNSGLKVHRR 459
>sp|Q98BZ8|ILVD1_RHILO Dihydroxy-acid dehydratase 1 (DAD 1)
          Length = 614

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 114 RSLDIYDESINADSESDPQSGFKVNQESKFVTCKSCGKTFTIHSINHHTVACDL 275
           ++LD+ D  + A  +       KV + S   TC SC   FT +S+N  T A  L
Sbjct: 160 QALDLVDAMVAAADDKISDEDVKVIERSACPTCGSCSGMFTANSMNCLTEALGL 213
>sp|Q02975|TCF17_RAT Zinc finger protein 354A (Transcription factor 17) (Renal
           transcription factor Kid-1) (Kidney, ischemia, and
           developmentally regulated protein 1)
          Length = 576

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 37/143 (25%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
 Frame = +3

Query: 9   CNRSF-NFESLKVHEKVCRGQFLAKSPSKPSAITFGRSLDIYDESINADSESDPQSGFKV 185
           C ++F N  SL+ HEK   G+ L K   K  +  F +S  +    I    E         
Sbjct: 193 CEKTFINTSSLRKHEKNHSGEKLFKC--KECSKAFSQSSALIQHQITHTGE--------- 241

Query: 186 NQESKFVTCKSCGKTFTIHS-----INHHTVACDLRAXXXXXXXXXXXXHDAGPTHIGRL 350
               K   CK CGK FT+ +     +  HTV    R                        
Sbjct: 242 ----KPYVCKECGKAFTLSTSLYKHLRTHTVEKSYR------------------------ 273

Query: 351 PGVVCYICGRNFGTTS-IDIHEK 416
               C  CG++FG  S + IH+K
Sbjct: 274 ----CKECGKSFGQRSGLFIHQK 292
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,636,345
Number of Sequences: 369166
Number of extensions: 1044484
Number of successful extensions: 3716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3630
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)