Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_I24
(769 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52737|ZN136_HUMAN Zinc finger protein 136 36 0.13
sp|P18715|ZG26_XENLA Gastrula zinc finger protein XLCGF26.1 35 0.17
sp|P18746|ZO26_XENLA Oocyte zinc finger protein XLCOF26 34 0.38
sp|Q9RV97|ILVD_DEIRA Dihydroxy-acid dehydratase (DAD) 33 0.85
sp|P18731|ZG62_XENLA Gastrula zinc finger protein XLCGF62.1 32 1.5
sp|O75820|ZN189_HUMAN Zinc finger protein 189 32 1.9
sp|P58317|ZN121_HUMAN Zinc finger protein 121 (Zinc finger ... 32 2.5
sp|Q8C827|ZFP62_MOUSE Zinc finger protein 62 homolog (Zfp-6... 32 2.5
sp|Q98BZ8|ILVD1_RHILO Dihydroxy-acid dehydratase 1 (DAD 1) 32 2.5
sp|Q02975|TCF17_RAT Zinc finger protein 354A (Transcription... 31 3.2
>sp|P52737|ZN136_HUMAN Zinc finger protein 136
Length = 540
Score = 35.8 bits (81), Expect = 0.13
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 13/150 (8%)
Frame = +3
Query: 6 KCNRSFNF-ESLKVHEKVCRGQ--FLAKSPSKP--SAITFGRSLDIYDESINADSESDPQ 170
+C ++F++ SL++HE++ G+ F+ K K SA TF Q
Sbjct: 312 QCGKAFSYLPSLRLHERIHTGEKPFVCKQCGKAFRSASTF-------------------Q 352
Query: 171 SGFKVNQESKFVTCKSCGKTFT-IHSINHHTVACDLRAXXXXXXXXXXXXHDAGP----- 332
+ + K CK CG+ F+ I S+ H + H P
Sbjct: 353 IHERTHTGEKPYECKECGEAFSCIPSMRRHMIK-HTGEGPYKCKVCGKPFHSLSPFRIHE 411
Query: 333 -THIGRLPGVVCYICGRNF-GTTSIDIHEK 416
TH G P VC CG+ F +TSI IHE+
Sbjct: 412 RTHTGEKP-YVCKHCGKAFVSSTSIRIHER 440
>sp|P18715|ZG26_XENLA Gastrula zinc finger protein XLCGF26.1
Length = 337
Score = 35.4 bits (80), Expect = 0.17
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +3
Query: 3 TKCNRSFNFE-SLKVHEKVCRGQFLAKSPSKPSAITF-GRSLDIYDESINADSESDPQSG 176
T+C +SF+ + +L+ H K+ G+ KP T+ G+S + + I+ Q+
Sbjct: 233 TECGKSFSEKKTLREHNKIHTGE-------KPFTCTYCGKS---FSQRISL------QNH 276
Query: 177 FKVNQESKFVTCKSCGKTFTIHSINHHTVACDLRAXXXXXXXXXXXXHDAGPTHIGRLPG 356
FK++ K +C CGK FTI S T+ L+ TH G P
Sbjct: 277 FKIHTGEKPFSCTECGKCFTIKS----TLQSHLKR-----------------THTGEKP- 314
Query: 357 VVCYICGRNF 386
C CG++F
Sbjct: 315 FTCTECGKSF 324
>sp|P18746|ZO26_XENLA Oocyte zinc finger protein XLCOF26
Length = 196
Score = 34.3 bits (77), Expect = 0.38
Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 2/139 (1%)
Frame = +3
Query: 3 TKCNRSFN-FESLKVHEKVCRGQFLAKSPSKPSAITFGRSLDIYDESINADSESDPQSGF 179
T+C +SFN + +L+ H K+ G+ P + SL +
Sbjct: 93 TECGKSFNLWSTLRNHHKIHTGEKPFTCPECGKKFSVKNSLRKHQ--------------- 137
Query: 180 KVNQESKFVTCKSCGKTFTIHSINHHTVACDLRAXXXXXXXXXXXXHDAGPTHIGRLPGV 359
+ + K TC CGKTFT S H H + TH G P
Sbjct: 138 RTHARKKLFTCTECGKTFTKKSTFH--------------------MHQS--THTGEKP-F 174
Query: 360 VCYICGRNFGTT-SIDIHE 413
C CG++F ++ IH+
Sbjct: 175 TCTECGKSFAKNGNLRIHQ 193
Score = 29.6 bits (65), Expect = 9.4
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 TKCNRSFNFES-LKVHEKVCRGQFLAKSPSKPSAITFGRSLDIYDESINADSESDPQSGF 179
T+C + F +S L+ H+++ G L T R+L I+
Sbjct: 37 TECGKIFTRKSNLRKHQRIHTGDNLFTCTECGKRFTEKRNLLIHQ--------------- 81
Query: 180 KVNQESKFVTCKSCGKTFTIHSI--NHHTV 263
+++ K TC CGK+F + S NHH +
Sbjct: 82 RIHTGEKPFTCTECGKSFNLWSTLRNHHKI 111
>sp|Q9RV97|ILVD_DEIRA Dihydroxy-acid dehydratase (DAD)
Length = 607
Score = 33.1 bits (74), Expect = 0.85
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 69 FLAKSPSKPSAITFG---RSLDIYDESINADSESDPQSGFKVNQESKFVTCKSCGKTFTI 239
F++ P + + G +LD+ D + A +S + ++ + S TC SC FT
Sbjct: 142 FVSGGPMEAGKVKLGDGEHALDLVDAMVMAADDSVSEEDIELVERSACPTCGSCSGMFTA 201
Query: 240 HSINHHTVACDL 275
+S+N T A L
Sbjct: 202 NSMNCLTEALGL 213
>sp|P18731|ZG62_XENLA Gastrula zinc finger protein XLCGF62.1
Length = 169
Score = 32.3 bits (72), Expect = 1.5
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Frame = +3
Query: 207 TCKSCGKTFTIHSI-NHHTVACD------LRAXXXXXXXXXXXXHDAGPTHIGRLPGVVC 365
TC CGK F++ SI NHH A + H TH G P VC
Sbjct: 91 TCTDCGKCFSVKSILNHHRQAIHSGEKPFICTECGKGFASKHYLHGHKRTHTGEKP-FVC 149
Query: 366 YICGRNFGTT-SIDIHEK 416
CG+ F + + +H++
Sbjct: 150 TECGKGFASNYYLHVHKR 167
>sp|O75820|ZN189_HUMAN Zinc finger protein 189
Length = 626
Score = 32.0 bits (71), Expect = 1.9
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 16/154 (10%)
Frame = +3
Query: 6 KCNRSFN-FESLKVHEKVCRG------QFLAKSPSKPSAITFGRSLDIYDESI--NADSE 158
+C +SF+ +L H+++ G + K+ S+ S + + + +++ N E
Sbjct: 376 ECGKSFSQLCNLTRHQRIHTGDKPHKCEECGKAFSRSSGLIQHQRIHTREKTYPYNETKE 435
Query: 159 S-DPQSGFKVNQE----SKFVTCKSCGKTFTI--HSINHHTVACDLRAXXXXXXXXXXXX 317
S DP + QE K C CGKTF++ H + H +
Sbjct: 436 SFDPNCSLVIQQEVYPKEKSYKCDECGKTFSVSAHLVQHQRI------------------ 477
Query: 318 HDAGPTHIGRLPGVVCYICGRNFGTTSIDIHEKQ 419
H G P +C +CG++F +S I ++
Sbjct: 478 ------HTGEKP-YLCTVCGKSFSRSSFLIEHQR 504
>sp|P58317|ZN121_HUMAN Zinc finger protein 121 (Zinc finger protein 20)
Length = 295
Score = 31.6 bits (70), Expect = 2.5
Identities = 27/100 (27%), Positives = 37/100 (37%)
Frame = +3
Query: 153 SESDPQSGFKVNQESKFVTCKSCGKTFTIHSINHHTVACDLRAXXXXXXXXXXXXHDAGP 332
S S ++ F+++ K CK CGK FT+ S H+ V
Sbjct: 172 SSSCLKNHFRIHTGIKPYKCKECGKAFTVSSSLHNHV----------------------K 209
Query: 333 THIGRLPGVVCYICGRNFGTTSIDIHEKQCLEKFRKQNNE 452
H G P C CG+ F T+S Q +E R E
Sbjct: 210 IHTGEKP-YECKDCGKAFATSS------QLIEHIRTHTGE 242
>sp|Q8C827|ZFP62_MOUSE Zinc finger protein 62 homolog (Zfp-62) (ZT3)
Length = 914
Score = 31.6 bits (70), Expect = 2.5
Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 17/154 (11%)
Frame = +3
Query: 6 KCNRSFNFESLKVHEKVCRG-------QFLAKSPSKPSAITFGRSLDIYDESINAD---S 155
+C +SFN+ SL + KV K+ S + + + ++ D
Sbjct: 331 ECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDICGK 390
Query: 156 ESDPQSGFKVNQE----SKFVTCKSCGKTFTIHS--INHHTVACDLRAXXXXXXXXXXXX 317
SG V++ K CK CGK+F+ +S + H T+
Sbjct: 391 AFSYSSGLAVHKSIHPGKKAHECKDCGKSFSYNSLLLQHKTI------------------ 432
Query: 318 HDAGPTHIGRLPGVVCYICGRNFGTTS-IDIHEK 416
H G P VC +CG+ F S + +H +
Sbjct: 433 ------HTGERP-YVCDVCGKTFRNNSGLKVHRR 459
>sp|Q98BZ8|ILVD1_RHILO Dihydroxy-acid dehydratase 1 (DAD 1)
Length = 614
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 114 RSLDIYDESINADSESDPQSGFKVNQESKFVTCKSCGKTFTIHSINHHTVACDL 275
++LD+ D + A + KV + S TC SC FT +S+N T A L
Sbjct: 160 QALDLVDAMVAAADDKISDEDVKVIERSACPTCGSCSGMFTANSMNCLTEALGL 213
>sp|Q02975|TCF17_RAT Zinc finger protein 354A (Transcription factor 17) (Renal
transcription factor Kid-1) (Kidney, ischemia, and
developmentally regulated protein 1)
Length = 576
Score = 31.2 bits (69), Expect = 3.2
Identities = 37/143 (25%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Frame = +3
Query: 9 CNRSF-NFESLKVHEKVCRGQFLAKSPSKPSAITFGRSLDIYDESINADSESDPQSGFKV 185
C ++F N SL+ HEK G+ L K K + F +S + I E
Sbjct: 193 CEKTFINTSSLRKHEKNHSGEKLFKC--KECSKAFSQSSALIQHQITHTGE--------- 241
Query: 186 NQESKFVTCKSCGKTFTIHS-----INHHTVACDLRAXXXXXXXXXXXXHDAGPTHIGRL 350
K CK CGK FT+ + + HTV R
Sbjct: 242 ----KPYVCKECGKAFTLSTSLYKHLRTHTVEKSYR------------------------ 273
Query: 351 PGVVCYICGRNFGTTS-IDIHEK 416
C CG++FG S + IH+K
Sbjct: 274 ----CKECGKSFGQRSGLFIHQK 292
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,636,345
Number of Sequences: 369166
Number of extensions: 1044484
Number of successful extensions: 3716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3630
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)