Planaria EST Database


DrC_01408

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01408
         (295 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96EE3|SEH1L_HUMAN  Nucleoporin SEH1-like (SEC13-like pro...    33   0.20 
sp|Q9A6R5|OPGH_CAUCR  Glucans biosynthesis glucosyltransfera...    32   0.45 
sp|P40070|LSM4_YEAST  U6 snRNA-associated Sm-like protein LSm4     31   0.76 
sp|Q14699|Y084_HUMAN  Hypothetical protein KIAA0084 (HA2022)       31   0.76 
sp|Q9Y8C7|MAT1_COCEL  Mating-type protein MAT-1                    30   1.3  
sp|Q10064|YAMB_SCHPO  Hypothetical protein C1F5.11c in chrom...    30   1.7  
sp|Q8TB96|TIP_HUMAN  T-cell immunomodulatory protein precurs...    30   2.2  
sp|Q9BYU7|KR413_HUMAN  Keratin-associated protein 4-13 (Kera...    30   2.2  
sp|Q9BQ66|KR412_HUMAN  Keratin-associated protein 4-12 (Kera...    30   2.2  
sp|Q9BYR3|KRA44_HUMAN  Keratin-associated protein 4-4 (Kerat...    30   2.2  
>sp|Q96EE3|SEH1L_HUMAN Nucleoporin SEH1-like (SEC13-like protein)
          Length = 421

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
 Frame = +2

Query: 2   SGEDGTIRFWTRNYLLHWQQVGC-------IQPELFAPTVLPGNDDTIPDMIGSRNSSNN 160
           SG+DG +R W  NY+ +W+  G        +       T  P    TIP +  S N S +
Sbjct: 296 SGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGS-S 354

Query: 161 AINHIGSNNTNPRNASATVQFHRRAPLP 244
           A  +  +   +PR  S    + +  P P
Sbjct: 355 AGRYFFTPLDSPRAGSRWSSYAQLLPPP 382
>sp|Q9A6R5|OPGH_CAUCR Glucans biosynthesis glucosyltransferase H
          Length = 663

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 204 ALRGLVLLEPMWFIALLLEFRLPIMSGMVSSFPGSTVGAN 85
           +L GL+L    WF   LL    PI++G+V + P + +GA+
Sbjct: 567 SLSGLILAASFWFTPDLLTATAPILAGLVLAVPLTMLGAH 606
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4
          Length = 187

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 146 NSSN--NAINHIGSNNTNPRNA-SATVQFHRRAPLPNRNEF 259
           NSSN  N+IN I SNN N  N    +VQ H  +  P + EF
Sbjct: 147 NSSNINNSINSINSNNQNMNNGLGGSVQHHFNSSSPQKVEF 187
>sp|Q14699|Y084_HUMAN Hypothetical protein KIAA0084 (HA2022)
          Length = 648

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 176 GSNNTNPRNASATVQFHRRAPLPNRNEFVWH*CSNK 283
           G  +T PR A+A    HRR   P     VWH  S++
Sbjct: 12  GGTDTRPRGATAHASTHRRPSPPRAASSVWHKLSSR 47
>sp|Q9Y8C7|MAT1_COCEL Mating-type protein MAT-1
          Length = 378

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 71  IQPELFAPTVLPGNDDTIPDMIGSRNSSNNAINH 172
           +Q   FAPT  P  +DT P  +G   SS   +NH
Sbjct: 193 VQKAGFAPTYTPDANDTSPTFLGQSLSSTFEVNH 226
>sp|Q10064|YAMB_SCHPO Hypothetical protein C1F5.11c in chromosome I
          Length = 3655

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 142  SEFQQQCNKPHWFQQY*PAQCF-CNCTVPQKSSS 240
            S+F+ +C  PHW+++Y    CF   C + Q  SS
Sbjct: 1111 SDFRHKCYDPHWYKKY--GGCFGLECLIEQDHSS 1142
>sp|Q8TB96|TIP_HUMAN T-cell immunomodulatory protein precursor (TIP protein)
          Length = 612

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +2

Query: 8   EDGTIRFWTRNYLLHWQQVGCIQPELF-APTVLPGNDDTIPDMIGSRNSSNNAINHIGSN 184
           E G + FW +N  L    +  +       P ++  N D IPD+ G  N SN     +G N
Sbjct: 129 ELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDLIPDIFGITNESNQPQILLGGN 188
>sp|Q9BYU7|KR413_HUMAN Keratin-associated protein 4-13 (Keratin-associated protein 4.13)
           (Ultrahigh sulfur keratin-associated protein 4.13)
          Length = 106

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 200 CAG*YCWNQ-CGLLHCCWNSDCQS--CREWCHR 111
           C G  C +Q CGL +CC  S CQ+  CR  C R
Sbjct: 5   CCGSVCSDQGCGLENCCRPSYCQTTCCRTTCCR 37
>sp|Q9BQ66|KR412_HUMAN Keratin-associated protein 4-12 (Keratin-associated protein 4.12)
           (Ultrahigh sulfur keratin-associated protein 4.12)
          Length = 201

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 200 CAG*YCWNQ-CGLLHCCWNSDCQS--CREWCHR 111
           C G  C +Q CGL +CC  S CQ+  CR  C R
Sbjct: 5   CCGSVCSDQGCGLENCCRPSCCQTTCCRTTCCR 37
>sp|Q9BYR3|KRA44_HUMAN Keratin-associated protein 4-4 (Keratin-associated protein 4.4)
           (Ultrahigh sulfur keratin-associated protein 4.4)
          Length = 166

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 200 CAG*YCWNQ-CGLLHCCWNSDCQS--CREWCHR 111
           C G  C +Q CGL +CC  S CQ+  CR  C R
Sbjct: 5   CCGSVCSDQGCGLENCCRPSYCQTTCCRTTCCR 37
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,266,278
Number of Sequences: 369166
Number of extensions: 832139
Number of successful extensions: 3226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3041
length of database: 68,354,980
effective HSP length: 67
effective length of database: 55,977,735
effective search space used: 1679332050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)