Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_I09
(295 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96EE3|SEH1L_HUMAN Nucleoporin SEH1-like (SEC13-like pro... 33 0.20
sp|Q9A6R5|OPGH_CAUCR Glucans biosynthesis glucosyltransfera... 32 0.45
sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 31 0.76
sp|Q14699|Y084_HUMAN Hypothetical protein KIAA0084 (HA2022) 31 0.76
sp|Q9Y8C7|MAT1_COCEL Mating-type protein MAT-1 30 1.3
sp|Q10064|YAMB_SCHPO Hypothetical protein C1F5.11c in chrom... 30 1.7
sp|Q8TB96|TIP_HUMAN T-cell immunomodulatory protein precurs... 30 2.2
sp|Q9BYU7|KR413_HUMAN Keratin-associated protein 4-13 (Kera... 30 2.2
sp|Q9BQ66|KR412_HUMAN Keratin-associated protein 4-12 (Kera... 30 2.2
sp|Q9BYR3|KRA44_HUMAN Keratin-associated protein 4-4 (Kerat... 30 2.2
>sp|Q96EE3|SEH1L_HUMAN Nucleoporin SEH1-like (SEC13-like protein)
Length = 421
Score = 33.1 bits (74), Expect = 0.20
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = +2
Query: 2 SGEDGTIRFWTRNYLLHWQQVGC-------IQPELFAPTVLPGNDDTIPDMIGSRNSSNN 160
SG+DG +R W NY+ +W+ G + T P TIP + S N S +
Sbjct: 296 SGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGS-S 354
Query: 161 AINHIGSNNTNPRNASATVQFHRRAPLP 244
A + + +PR S + + P P
Sbjct: 355 AGRYFFTPLDSPRAGSRWSSYAQLLPPP 382
>sp|Q9A6R5|OPGH_CAUCR Glucans biosynthesis glucosyltransferase H
Length = 663
Score = 32.0 bits (71), Expect = 0.45
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 204 ALRGLVLLEPMWFIALLLEFRLPIMSGMVSSFPGSTVGAN 85
+L GL+L WF LL PI++G+V + P + +GA+
Sbjct: 567 SLSGLILAASFWFTPDLLTATAPILAGLVLAVPLTMLGAH 606
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4
Length = 187
Score = 31.2 bits (69), Expect = 0.76
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 146 NSSN--NAINHIGSNNTNPRNA-SATVQFHRRAPLPNRNEF 259
NSSN N+IN I SNN N N +VQ H + P + EF
Sbjct: 147 NSSNINNSINSINSNNQNMNNGLGGSVQHHFNSSSPQKVEF 187
>sp|Q14699|Y084_HUMAN Hypothetical protein KIAA0084 (HA2022)
Length = 648
Score = 31.2 bits (69), Expect = 0.76
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 176 GSNNTNPRNASATVQFHRRAPLPNRNEFVWH*CSNK 283
G +T PR A+A HRR P VWH S++
Sbjct: 12 GGTDTRPRGATAHASTHRRPSPPRAASSVWHKLSSR 47
>sp|Q9Y8C7|MAT1_COCEL Mating-type protein MAT-1
Length = 378
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 71 IQPELFAPTVLPGNDDTIPDMIGSRNSSNNAINH 172
+Q FAPT P +DT P +G SS +NH
Sbjct: 193 VQKAGFAPTYTPDANDTSPTFLGQSLSSTFEVNH 226
>sp|Q10064|YAMB_SCHPO Hypothetical protein C1F5.11c in chromosome I
Length = 3655
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 142 SEFQQQCNKPHWFQQY*PAQCF-CNCTVPQKSSS 240
S+F+ +C PHW+++Y CF C + Q SS
Sbjct: 1111 SDFRHKCYDPHWYKKY--GGCFGLECLIEQDHSS 1142
>sp|Q8TB96|TIP_HUMAN T-cell immunomodulatory protein precursor (TIP protein)
Length = 612
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 8 EDGTIRFWTRNYLLHWQQVGCIQPELF-APTVLPGNDDTIPDMIGSRNSSNNAINHIGSN 184
E G + FW +N L + + P ++ N D IPD+ G N SN +G N
Sbjct: 129 ELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDLIPDIFGITNESNQPQILLGGN 188
>sp|Q9BYU7|KR413_HUMAN Keratin-associated protein 4-13 (Keratin-associated protein 4.13)
(Ultrahigh sulfur keratin-associated protein 4.13)
Length = 106
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 200 CAG*YCWNQ-CGLLHCCWNSDCQS--CREWCHR 111
C G C +Q CGL +CC S CQ+ CR C R
Sbjct: 5 CCGSVCSDQGCGLENCCRPSYCQTTCCRTTCCR 37
>sp|Q9BQ66|KR412_HUMAN Keratin-associated protein 4-12 (Keratin-associated protein 4.12)
(Ultrahigh sulfur keratin-associated protein 4.12)
Length = 201
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 200 CAG*YCWNQ-CGLLHCCWNSDCQS--CREWCHR 111
C G C +Q CGL +CC S CQ+ CR C R
Sbjct: 5 CCGSVCSDQGCGLENCCRPSCCQTTCCRTTCCR 37
>sp|Q9BYR3|KRA44_HUMAN Keratin-associated protein 4-4 (Keratin-associated protein 4.4)
(Ultrahigh sulfur keratin-associated protein 4.4)
Length = 166
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 200 CAG*YCWNQ-CGLLHCCWNSDCQS--CREWCHR 111
C G C +Q CGL +CC S CQ+ CR C R
Sbjct: 5 CCGSVCSDQGCGLENCCRPSYCQTTCCRTTCCR 37
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,266,278
Number of Sequences: 369166
Number of extensions: 832139
Number of successful extensions: 3226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3041
length of database: 68,354,980
effective HSP length: 67
effective length of database: 55,977,735
effective search space used: 1679332050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)