Planaria EST Database


DrC_01403

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01403
         (385 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CQY1|ATG12_MOUSE  Autophagy protein 12 (APG12-like)          110   1e-24
sp|O94817|ATG12_HUMAN  Autophagy protein 12 (APG12-like)          110   1e-24
sp|Q5R7W1|ATG12_PONPY  Autophagy protein 12 (APG12-like)          108   3e-24
sp|Q9VTU1|APG12_DROME  Autophagy protein 12-like (APG12-like)      72   5e-13
sp|Q55S70|ATG12_CRYNE  Autophagy-related protein 12 (Autopha...    61   7e-10
sp|Q9US24|ATG12_SCHPO  Autophagy-related protein 12 (Autopha...    59   3e-09
sp|Q51P78|ATG12_MAGGR  Autophagy-related protein 12 (Autopha...    59   3e-09
sp|Q6BZZ1|ATG12_YARLI  Autophagy-related protein 12 (Autopha...    58   6e-09
sp|Q7S083|ATG12_NEUCR  Autophagy-related protein 12 (Autopha...    57   1e-08
sp|Q5BCH0|ATG12_EMENI  Autophagy-related protein 12 (Autopha...    54   1e-07
>sp|Q9CQY1|ATG12_MOUSE Autophagy protein 12 (APG12-like)
          Length = 141

 Score =  110 bits (274), Expect = 1e-24
 Identities = 47/87 (54%), Positives = 65/87 (74%)
 Frame = +1

Query: 97  KIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLD 276
           KID++LKA GD PI+K KKW VERT T+  +I F+K  LK  + E +F++ N SFAPS D
Sbjct: 55  KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPD 114

Query: 277 TDLGSLYDCYNVKGKLIVHYCKTPAWG 357
            ++G+LY+C+   GKL++HYCK+ AWG
Sbjct: 115 QEVGTLYECFGSDGKLVLHYCKSQAWG 141
>sp|O94817|ATG12_HUMAN Autophagy protein 12 (APG12-like)
          Length = 140

 Score =  110 bits (274), Expect = 1e-24
 Identities = 47/87 (54%), Positives = 65/87 (74%)
 Frame = +1

Query: 97  KIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLD 276
           KID++LKA GD PI+K KKW VERT T+  +I F+K  LK  + E +F++ N SFAPS D
Sbjct: 54  KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPD 113

Query: 277 TDLGSLYDCYNVKGKLIVHYCKTPAWG 357
            ++G+LY+C+   GKL++HYCK+ AWG
Sbjct: 114 QEVGTLYECFGSDGKLVLHYCKSQAWG 140
>sp|Q5R7W1|ATG12_PONPY Autophagy protein 12 (APG12-like)
          Length = 140

 Score =  108 bits (271), Expect = 3e-24
 Identities = 47/87 (54%), Positives = 64/87 (73%)
 Frame = +1

Query: 97  KIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLD 276
           KID++LKA GD PI+K KKW VERT T+   I F+K  LK  + E +F++ N SFAPS D
Sbjct: 54  KIDILLKAVGDTPIMKTKKWAVERTRTIQGPIDFIKKFLKLVASEQLFIYVNQSFAPSPD 113

Query: 277 TDLGSLYDCYNVKGKLIVHYCKTPAWG 357
            ++G+LY+C+   GKL++HYCK+ AWG
Sbjct: 114 QEVGTLYECFGSDGKLVLHYCKSQAWG 140
>sp|Q9VTU1|APG12_DROME Autophagy protein 12-like (APG12-like)
          Length = 106

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 34/94 (36%), Positives = 55/94 (58%)
 Frame = +1

Query: 76  TQGLKSDKIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNL 255
           +Q L S  + ++L A G+ PI+K++ W V+   TV  +  F+   LK  + E I      
Sbjct: 19  SQRLASLSVCILLNATGNVPIIKKRTWTVDPNKTVGWIQTFIHKFLKLDASEQI------ 72

Query: 256 SFAPSLDTDLGSLYDCYNVKGKLIVHYCKTPAWG 357
           +FAP+ D  + +LY+C+   GKL+++YCK  AWG
Sbjct: 73  TFAPAPDQIIKNLYECHGTNGKLVLYYCKNQAWG 106
>sp|Q55S70|ATG12_CRYNE Autophagy-related protein 12 (Autophagy-related ubiquitin-like
           modifier ATG12)
          Length = 105

 Score = 61.2 bits (147), Expect = 7e-10
 Identities = 30/81 (37%), Positives = 45/81 (55%)
 Frame = +1

Query: 115 KAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLDTDLGSL 294
           K+ G API+K   +          VI FL+  L    ++++F + N +FAP+ D  +GSL
Sbjct: 25  KSIGSAPIMKNNVFKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINAAFAPAPDDTVGSL 84

Query: 295 YDCYNVKGKLIVHYCKTPAWG 357
           Y  +  +G LIV+Y  T AWG
Sbjct: 85  YKSFGTEGHLIVNYSNTQAWG 105
>sp|Q9US24|ATG12_SCHPO Autophagy-related protein 12 (Autophagy-related ubiquitin-like
           modifier atg12)
          Length = 132

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 32/102 (31%), Positives = 57/102 (55%)
 Frame = +1

Query: 52  SNEAEINDTQGLKSDKIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDE 231
           S E  IN  +  ++ +++L  KA G  P+L++  + +  +     V +FLK  L    + 
Sbjct: 31  SIETIINTYREKENRRVNLRFKAIGRTPLLRKTVFSINASQRFEKVTRFLKKELGLPMNS 90

Query: 232 NIFLFCNLSFAPSLDTDLGSLYDCYNVKGKLIVHYCKTPAWG 357
           ++ L+ N SFAPS D  +G+LYD + +   L+++YC   A+G
Sbjct: 91  SLVLYVNSSFAPSPDEIVGNLYDNFAIDSHLLINYCINVAFG 132
>sp|Q51P78|ATG12_MAGGR Autophagy-related protein 12 (Autophagy-related ubiquitin-like
           modifier ATG12)
          Length = 181

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +1

Query: 124 GDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLDTDLGSLYDC 303
           G AP L+++   +        V+ +L+  LK G+ E++FL+ N +FAP+LD  +G+L+ C
Sbjct: 103 GSAPALRKELCKISAAQRFEAVVAYLRRTLKVGNGESVFLYINSTFAPALDEIVGNLHRC 162

Query: 304 Y-NVKGKLIVHYCKTPAWG 357
           + +  G+L V Y  TPA+G
Sbjct: 163 FKDSNGQLNVSYSMTPAFG 181
>sp|Q6BZZ1|ATG12_YARLI Autophagy-related protein 12 (Autophagy-related ubiquitin-like
           modifier ATG12)
          Length = 205

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
 Frame = +1

Query: 76  TQGLKSDKIDLILK---AAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLF 246
           +Q L+   +   LK     G  P LK+  + +  T     V++FL+  LK  + ++  +F
Sbjct: 108 SQQLQQSNVKCQLKFRPIGGATPSLKQSVYKIAETQQFGVVVKFLRKQLKIKNSQSSQIF 167

Query: 247 CNLS-FAPSLDTDLGSLYDCYNVKGKLIVHYCKTPAWG 357
           C +S FAP LD  +GSLY+ Y ++G+L + YC   A+G
Sbjct: 168 CYISSFAPGLDETVGSLYNRYAIRGELTISYCLNQAFG 205
>sp|Q7S083|ATG12_NEUCR Autophagy-related protein 12 (Autophagy-related ubiquitin-like
           modifier atg-12)
          Length = 157

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +1

Query: 94  DKIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSL 273
           +K+ +  K  G AP L+R++  V  T +   V+ +L+  LK    +++FL+ N  FAP+L
Sbjct: 69  EKVVIRFKPVGSAPALRREQVKVLSTHSFETVVAYLRKTLKVQETDSVFLYVNSVFAPAL 128

Query: 274 DTDLGSLYDCY-NVKGKLIVHYCKTPAWG 357
           D  +G+L+ C+ +   +L V Y  TP++G
Sbjct: 129 DEVVGNLWRCFKDSTNQLNVSYSMTPSFG 157
>sp|Q5BCH0|ATG12_EMENI Autophagy-related protein 12 (Autophagy-related ubiquitin-like
           modifier atg12)
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 28/95 (29%), Positives = 48/95 (50%)
 Frame = +1

Query: 73  DTQGLKSDKIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCN 252
           D + + + K+ +  +    APILK + + +  +     V+ FL+  L C   +++  + N
Sbjct: 72  DAEAIDTGKVTVRFQPLASAPILKNRVFKISASQKFETVVNFLRKKLNCKDTDSVICYVN 131

Query: 253 LSFAPSLDTDLGSLYDCYNVKGKLIVHYCKTPAWG 357
             FAP LD  +G L   +    +LIV Y  TPA+G
Sbjct: 132 SVFAPRLDEGVGGL---WRTDDQLIVAYSMTPAFG 163
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,579,625
Number of Sequences: 369166
Number of extensions: 765520
Number of successful extensions: 1750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)